Atomistry » Sodium » PDB 3dh4-3e3y » 3dkk
Atomistry »
  Sodium »
    PDB 3dh4-3e3y »
      3dkk »

Sodium in PDB 3dkk: Aged Form of Human Butyrylcholinesterase Inhibited By Tabun

Enzymatic activity of Aged Form of Human Butyrylcholinesterase Inhibited By Tabun

All present enzymatic activity of Aged Form of Human Butyrylcholinesterase Inhibited By Tabun:
3.1.1.8;

Protein crystallography data

The structure of Aged Form of Human Butyrylcholinesterase Inhibited By Tabun, PDB code: 3dkk was solved by F.Nachon, E.Carletti, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.18 / 2.31
Space group I 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 155.240, 155.240, 127.470, 90.00, 90.00, 90.00
R / Rfree (%) 19.7 / 25.1

Other elements in 3dkk:

The structure of Aged Form of Human Butyrylcholinesterase Inhibited By Tabun also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Aged Form of Human Butyrylcholinesterase Inhibited By Tabun (pdb code 3dkk). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Aged Form of Human Butyrylcholinesterase Inhibited By Tabun, PDB code: 3dkk:

Sodium binding site 1 out of 1 in 3dkk

Go back to Sodium Binding Sites List in 3dkk
Sodium binding site 1 out of 1 in the Aged Form of Human Butyrylcholinesterase Inhibited By Tabun


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Aged Form of Human Butyrylcholinesterase Inhibited By Tabun within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na543

b:57.9
occ:0.50
CZ A:PHE525 3.3 53.9 1.0
CE2 A:PHE525 3.4 52.5 1.0
CE1 A:PHE525 3.7 52.7 1.0
CD2 A:PHE525 3.8 51.7 1.0
CD1 A:PHE525 4.1 52.9 1.0
CG A:PHE525 4.1 49.7 1.0
CE1 A:HIS372 4.1 34.6 0.5
CZ A:PHE364 4.7 27.9 1.0
CB A:SER368 4.9 32.0 1.0
NE2 A:HIS372 5.0 34.3 0.5

Reference:

E.Carletti, H.Li, B.Li, F.Ekstrom, Y.Nicolet, M.Loiodice, E.Gillon, M.T.Froment, O.Lockridge, L.M.Schopfer, P.Masson, F.Nachon. Aging of Cholinesterases Phosphylated By Tabun Proceeds Through O-Dealkylation. J.Am.Chem.Soc. V. 130 16011 2008.
ISSN: ISSN 0002-7863
PubMed: 18975951
DOI: 10.1021/JA804941Z
Page generated: Tue Dec 15 06:08:59 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy