Atomistry » Sodium » PDB 3a07-3ahi » 3a92
Atomistry »
  Sodium »
    PDB 3a07-3ahi »
      3a92 »

Sodium in PDB 3a92: Crystal Structure of Hen Egg White Lysozyme Soaked with 10MM RHCL3

Enzymatic activity of Crystal Structure of Hen Egg White Lysozyme Soaked with 10MM RHCL3

All present enzymatic activity of Crystal Structure of Hen Egg White Lysozyme Soaked with 10MM RHCL3:
3.2.1.17;

Protein crystallography data

The structure of Crystal Structure of Hen Egg White Lysozyme Soaked with 10MM RHCL3, PDB code: 3a92 was solved by S.Abe, T.Koshiyama, T.Ohki, T.Hikage, Y.Watanabe, T.Ueno, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.51 / 1.50
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.318, 78.318, 37.210, 90.00, 90.00, 90.00
R / Rfree (%) 18.5 / 21.7

Other elements in 3a92:

The structure of Crystal Structure of Hen Egg White Lysozyme Soaked with 10MM RHCL3 also contains other interesting chemical elements:

Rhodium (Rh) 4 atoms
Chlorine (Cl) 6 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Hen Egg White Lysozyme Soaked with 10MM RHCL3 (pdb code 3a92). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Hen Egg White Lysozyme Soaked with 10MM RHCL3, PDB code: 3a92:

Sodium binding site 1 out of 1 in 3a92

Go back to Sodium Binding Sites List in 3a92
Sodium binding site 1 out of 1 in the Crystal Structure of Hen Egg White Lysozyme Soaked with 10MM RHCL3


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Hen Egg White Lysozyme Soaked with 10MM RHCL3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na130

b:15.2
occ:1.00
 O A:SER60 2.3 14.3 1.0
O A:HOH153 2.4 17.9 1.0
O A:ARG73 2.4 18.4 1.0
O A:HOH144 2.4 14.3 1.0
O A:CYS64 2.5 12.5 1.0
OG A:SER72 2.6 20.5 1.0
CB A:SER72 3.3 20.2 1.0
C A:SER60 3.5 14.3 1.0
C A:ARG73 3.5 18.0 1.0
C A:CYS64 3.5 11.6 1.0
N A:ARG73 3.9 19.2 1.0
CA A:ASN65 4.0 11.6 1.0
CA A:SER60 4.1 12.7 1.0
C A:SER72 4.1 20.2 1.0
N A:ASN65 4.2 11.5 1.0
CA A:ARG73 4.3 18.8 1.0
CB A:SER60 4.3 12.8 1.0
CA A:SER72 4.4 20.5 1.0
N A:ASN74 4.4 16.9 1.0
O A:HOH241 4.4 34.2 1.0
N A:CYS64 4.5 12.4 1.0
N A:ARG61 4.5 15.2 1.0
C A:ARG61 4.6 16.2 1.0
CA A:ASN74 4.6 16.0 1.0
O A:ARG61 4.6 17.0 1.0
CA A:CYS64 4.6 12.4 1.0
ND2 A:ASN65 4.7 13.8 1.0
N A:ASP66 4.7 10.8 1.0
CB A:THR69 4.7 15.8 1.0
CL A:CL132 4.7 20.3 1.0
CB A:ASN74 4.7 15.9 1.0
O A:SER72 4.7 20.6 1.0
CA A:ARG61 4.8 16.4 0.5
CA A:ARG61 4.8 16.4 0.5
N A:TRP62 4.9 16.1 1.0
CB A:ASN65 4.9 11.9 1.0
C A:ASN65 4.9 10.9 1.0
O A:THR69 4.9 17.5 1.0
O A:HOH254 4.9 32.6 1.0

Reference:

T.Ueno, S.Abe, T.Koshiyama, T.Ohki, T.Hikage, Y.Watanabe. Elucidation of Metal-Ion Accumulation Induced By Hydrogen Bonds on Protein Surfaces By Using Porous Lysozyme Crystals Containing Rh(III) Ions As the Model Surfaces Chemistry V. 16 2730 2010.
ISSN: ISSN 0947-6539
PubMed: 20146274
DOI: 10.1002/CHEM.200903269
Page generated: Mon Oct 7 05:45:22 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy