Atomistry » Sodium » PDB 3a07-3ahi » 3a91
Atomistry »
  Sodium »
    PDB 3a07-3ahi »
      3a91 »

Sodium in PDB 3a91: Crystal Structure of Hen Egg White Lysozyme Soaked with 5MM RHCL3

Enzymatic activity of Crystal Structure of Hen Egg White Lysozyme Soaked with 5MM RHCL3

All present enzymatic activity of Crystal Structure of Hen Egg White Lysozyme Soaked with 5MM RHCL3:
3.2.1.17;

Protein crystallography data

The structure of Crystal Structure of Hen Egg White Lysozyme Soaked with 5MM RHCL3, PDB code: 3a91 was solved by S.Abe, T.Koshiyama, T.Ohki, T.Hikage, Y.Watanabe, T.Ueno, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 18.41 / 1.55
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.122, 78.122, 37.151, 90.00, 90.00, 90.00
R / Rfree (%) 18.6 / 20.7

Other elements in 3a91:

The structure of Crystal Structure of Hen Egg White Lysozyme Soaked with 5MM RHCL3 also contains other interesting chemical elements:

Rhodium (Rh) 1 atom
Chlorine (Cl) 7 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Hen Egg White Lysozyme Soaked with 5MM RHCL3 (pdb code 3a91). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Hen Egg White Lysozyme Soaked with 5MM RHCL3, PDB code: 3a91:

Sodium binding site 1 out of 1 in 3a91

Go back to Sodium Binding Sites List in 3a91
Sodium binding site 1 out of 1 in the Crystal Structure of Hen Egg White Lysozyme Soaked with 5MM RHCL3


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Hen Egg White Lysozyme Soaked with 5MM RHCL3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na130

b:16.1
occ:1.00
 O A:HOH155 2.3 16.8 1.0
O A:SER60 2.3 15.4 1.0
O A:HOH147 2.4 14.3 1.0
O A:ARG73 2.5 18.5 1.0
OG A:SER72 2.5 21.2 1.0
O A:CYS64 2.5 12.8 1.0
CB A:SER72 3.3 20.8 1.0
C A:SER60 3.5 15.1 1.0
C A:ARG73 3.5 18.5 1.0
C A:CYS64 3.6 12.6 1.0
N A:ARG73 3.9 19.5 1.0
CA A:ASN65 4.0 12.9 1.0
CA A:SER60 4.1 14.0 1.0
C A:SER72 4.1 20.6 1.0
N A:ASN65 4.2 13.1 1.0
CB A:SER60 4.3 14.7 1.0
CA A:ARG73 4.3 19.0 1.0
CA A:SER72 4.3 21.1 1.0
N A:ASN74 4.4 17.6 1.0
O A:HOH227 4.4 34.5 1.0
N A:CYS64 4.5 13.4 1.0
C A:ARG61 4.6 17.4 1.0
N A:ARG61 4.6 16.0 1.0
O A:ARG61 4.6 18.4 1.0
CB A:THR69 4.6 17.0 1.0
CL A:CL132 4.6 21.2 1.0
CA A:ASN74 4.7 16.5 1.0
ND2 A:ASN65 4.7 14.7 1.0
N A:ASP66 4.7 12.1 1.0
O A:SER72 4.7 21.1 1.0
CA A:CYS64 4.7 13.5 1.0
CB A:ASN74 4.8 16.4 1.0
CA A:ARG61 4.8 17.7 1.0
N A:TRP62 4.9 16.9 1.0
CB A:ASN65 4.9 13.5 1.0
O A:THR69 4.9 18.2 1.0
C A:ASN65 4.9 12.1 1.0

Reference:

T.Ueno, S.Abe, T.Koshiyama, T.Ohki, T.Hikage, Y.Watanabe. Elucidation of Metal-Ion Accumulation Induced By Hydrogen Bonds on Protein Surfaces By Using Porous Lysozyme Crystals Containing Rh(III) Ions As the Model Surfaces Chemistry V. 16 2730 2010.
ISSN: ISSN 0947-6539
PubMed: 20146274
DOI: 10.1002/CHEM.200903269
Page generated: Mon Oct 7 05:45:21 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy