Sodium in PDB 378d: Structure of the Side-By-Side Binding of Distamycin to Dna

The structure of Structure of the Side-By-Side Binding of Distamycin to Dna, PDB code: 378d was solved by S.N.Mitra, M.C.Wahl, M.Sundaralingam, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	8.00 / 2.40
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	29.550, 42.180, 43.380, 90.00, 96.56, 90.00
R / Rfree (%)	21 / 28.6

The binding sites of Sodium atom in the Structure of the Side-By-Side Binding of Distamycin to Dna (pdb code 378d). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of the Side-By-Side Binding of Distamycin to Dna, PDB code: 378d:

Sodium binding site 1 out of 1 in the Structure of the Side-By-Side Binding of Distamycin to Dna


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of the Side-By-Side Binding of Distamycin to Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Na37 b:16.6 occ:1.00 O A:HOH77 2.2 40.2 1.0 O A:HOH75 2.3 51.6 1.0 O A:HOH78 2.5 45.7 1.0 O A:HOH76 2.6 21.9 1.0 OP1 A:DT6 3.9 25.8 1.0 OP2 A:DT6 4.2 30.4 1.0 P A:DT6 4.4 21.8 1.0 O3' A:DA5 4.9 28.5 1.0

S.N.Mitra, M.C.Wahl, M.Sundaralingam. Structure of the Side-By-Side Binding of Distamycin to D(Gtatatac)2. Acta Crystallogr.,Sect.D V. 55 602 1999.
ISSN: ISSN 0907-4449
PubMed: 10089456
DOI: 10.1107/S0907444998012475