Sodium in PDB 2zxl: Crystal Structure of Red Chlorophyll Catabolite Reductase From Arabidopsis Thaliana

All present enzymatic activity of Crystal Structure of Red Chlorophyll Catabolite Reductase From Arabidopsis Thaliana:
1.3.1.80;

The structure of Crystal Structure of Red Chlorophyll Catabolite Reductase From Arabidopsis Thaliana, PDB code: 2zxl was solved by M.Sugishima, Y.Kitamori, K.Fukuyama, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.40
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	52.286, 68.140, 83.273, 90.00, 95.32, 90.00
R / Rfree (%)	21.6 / 29.8

The binding sites of Sodium atom in the Crystal Structure of Red Chlorophyll Catabolite Reductase From Arabidopsis Thaliana (pdb code 2zxl). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Red Chlorophyll Catabolite Reductase From Arabidopsis Thaliana, PDB code: 2zxl:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of Red Chlorophyll Catabolite Reductase From Arabidopsis Thaliana


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Red Chlorophyll Catabolite Reductase From Arabidopsis Thaliana within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1 b:65.8 occ:1.00 O A:VAL204 2.6 27.0 1.0 O A:LEU201 2.8 32.9 1.0 O A:LEU199 3.2 34.1 1.0 C A:VAL204 3.4 27.4 1.0 O A:PRO202 3.7 31.4 1.0 ND2 A:ASN205 3.8 28.2 1.0 N A:VAL204 3.9 28.7 1.0 C A:LEU201 3.9 32.6 1.0 C A:PRO202 3.9 31.4 1.0 CA A:PRO202 4.0 31.9 1.0 CA A:VAL204 4.2 27.8 1.0 N A:ASN205 4.3 27.4 1.0 C A:LEU199 4.3 33.8 1.0 N A:PRO202 4.4 32.4 1.0 CA A:ASN205 4.5 27.6 1.0 N A:GLU203 4.5 30.9 1.0 CG A:ASN205 4.6 28.4 1.0 CB A:VAL204 4.7 27.5 1.0 C A:GLU203 4.9 29.3 1.0 C A:LYS200 4.9 33.6 1.0 CD1 A:LEU199 4.9 33.0 1.0 O A:LYS200 4.9 34.1 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of Red Chlorophyll Catabolite Reductase From Arabidopsis Thaliana


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Red Chlorophyll Catabolite Reductase From Arabidopsis Thaliana within 5.0Å range: probe atom residue distance (Å) B Occ B:Na2 b:57.1 occ:1.00 O B:LEU199 2.3 32.5 1.0 O B:VAL204 2.3 27.3 1.0 O B:LEU201 2.7 32.5 1.0 C B:LEU199 3.5 32.4 1.0 C B:VAL204 3.5 27.2 1.0 C B:LEU201 3.8 32.3 1.0 CD1 B:LEU199 3.9 32.9 1.0 O B:LYS200 4.0 32.5 1.0 C B:LYS200 4.2 32.6 1.0 CA B:LEU199 4.2 32.0 1.0 CA B:PRO202 4.3 31.6 1.0 N B:VAL204 4.4 28.5 1.0 CA B:VAL204 4.4 27.7 1.0 OD1 B:ASN205 4.4 26.1 1.0 N B:PRO202 4.4 32.0 1.0 N B:ASN205 4.5 26.5 1.0 N B:LYS200 4.5 32.3 1.0 CG B:LEU199 4.5 32.6 1.0 N B:LEU201 4.6 32.3 1.0 C B:PRO202 4.6 31.0 1.0 CA B:ASN205 4.6 26.4 1.0 O B:PRO202 4.7 30.7 1.0 CB B:VAL204 4.7 27.4 1.0 CA B:LYS200 4.7 32.6 1.0 CA B:LEU201 4.8 32.1 1.0 CB B:LEU199 4.8 32.0 1.0 CG B:ASN205 4.9 26.1 1.0

M.Sugishima, Y.Kitamori, M.Noguchi, T.Kohchi, K.Fukuyama. Crystal Structure of Red Chlorophyll Catabolite Reductase: Enlargement of the Ferredoxin-Dependent Bilin Reductase Family J.Mol.Biol. V. 389 376 2009.
ISSN: ISSN 0022-2836
PubMed: 19374909
DOI: 10.1016/J.JMB.2009.04.017