Atomistry » Sodium » PDB 2zgx-3a03 » 2zn8
Atomistry »
  Sodium »
    PDB 2zgx-3a03 »
      2zn8 »

Sodium in PDB 2zn8: Crystal Structure of ZN2+-Bound Form of Alg-2

Protein crystallography data

The structure of Crystal Structure of ZN2+-Bound Form of Alg-2, PDB code: 2zn8 was solved by H.Suzuki, M.Kawasaki, T.Inuzuka, T.Kakiuchi, H.Shibata, S.Wakatsuki, M.Maki, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.10 / 2.70
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 72.010, 169.738, 46.343, 90.00, 90.00, 90.00
R / Rfree (%) 21.1 / 26

Other elements in 2zn8:

The structure of Crystal Structure of ZN2+-Bound Form of Alg-2 also contains other interesting chemical elements:

Zinc (Zn) 4 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of ZN2+-Bound Form of Alg-2 (pdb code 2zn8). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of ZN2+-Bound Form of Alg-2, PDB code: 2zn8:

Sodium binding site 1 out of 1 in 2zn8

Go back to Sodium Binding Sites List in 2zn8
Sodium binding site 1 out of 1 in the Crystal Structure of ZN2+-Bound Form of Alg-2


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of ZN2+-Bound Form of Alg-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na995

b:25.9
occ:1.00
O A:TRP175 2.4 26.8 1.0
OD1 A:ASP171 2.5 34.3 1.0
OD1 A:ASP169 2.6 34.7 1.0
OD1 A:ASP173 2.7 29.6 1.0
ZN A:ZN993 3.0 28.0 1.0
C A:TRP175 3.4 26.6 1.0
CG A:ASP171 3.4 33.6 1.0
CG A:ASP173 3.5 30.2 1.0
CG A:ASP169 3.7 35.4 1.0
OD2 A:ASP173 3.8 27.4 1.0
OD2 A:ASP171 3.8 32.8 1.0
N A:TRP175 4.0 27.8 1.0
CA A:TRP175 4.0 27.0 1.0
CB A:TRP175 4.1 26.4 1.0
CA A:ASP169 4.2 35.5 1.0
N A:ILE176 4.3 26.2 1.0
N A:ASP171 4.4 35.1 1.0
CB A:ASP169 4.4 35.5 1.0
N A:ASP173 4.4 32.9 1.0
C A:ASP169 4.5 35.5 1.0
N A:THR170 4.6 35.5 1.0
CA A:ILE176 4.6 25.9 1.0
OD2 A:ASP169 4.7 33.8 1.0
N A:GLN172 4.7 35.1 1.0
CB A:ASP171 4.7 34.4 1.0
CB A:ASP173 4.8 31.2 1.0
CA A:ASP171 4.9 34.7 1.0
C A:ASP171 4.9 34.9 1.0
CA A:ASP173 5.0 31.3 1.0

Reference:

H.Suzuki, M.Kawasaki, T.Inuzuka, M.Okumura, T.Kakiuchi, H.Shibata, S.Wakatsuki, M.Maki. Structural Basis For Ca(2+)-Dependent Formation of Alg-2/Alix Peptide Complex: Ca(2+)/EF3-Driven Arginine Switch Mechanism Structure V. 16 1562 2008.
ISSN: ISSN 0969-2126
PubMed: 18940611
DOI: 10.1016/J.STR.2008.07.012
Page generated: Mon Oct 7 05:37:50 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy