Sodium in PDB 2zil: Crystal Structure of Human Lysozyme From Urine

All present enzymatic activity of Crystal Structure of Human Lysozyme From Urine:
3.2.1.17;

The structure of Crystal Structure of Human Lysozyme From Urine, PDB code: 2zil was solved by T.Tamada, R.Kuroki, T.Koshiba, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.52 / 1.80
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	56.700, 61.000, 34.000, 90.00, 90.00, 90.00
R / Rfree (%)	17 / 22.7

The binding sites of Sodium atom in the Crystal Structure of Human Lysozyme From Urine (pdb code 2zil). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Human Lysozyme From Urine, PDB code: 2zil:

Sodium binding site 1 out of 1 in the Crystal Structure of Human Lysozyme From Urine


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Human Lysozyme From Urine within 5.0Å range: probe atom residue distance (Å) B Occ A:Na131 b:24.3 occ:1.00 O A:CYS65 2.2 9.6 1.0 O A:SER61 2.3 12.9 1.0 O A:VAL74 2.3 13.4 1.0 O A:HOH147 2.4 18.7 1.0 O A:HOH153 2.7 11.4 1.0 C A:CYS65 3.2 8.9 1.0 C A:VAL74 3.3 14.2 1.0 CB A:ALA73 3.4 16.4 1.0 C A:SER61 3.4 12.4 1.0 CA A:ASN66 3.7 8.4 1.0 N A:ASN66 3.8 8.4 1.0 N A:VAL74 3.9 15.3 1.0 N A:CYS65 4.1 10.0 1.0 O A:ARG62 4.1 15.3 1.0 CA A:VAL74 4.2 14.8 1.0 N A:ASN75 4.2 13.3 1.0 C A:ALA73 4.2 16.5 1.0 C A:ARG62 4.2 14.0 1.0 CA A:SER61 4.2 11.4 1.0 CA A:ASN75 4.2 13.4 1.0 CA A:CYS65 4.3 9.2 1.0 CA A:ALA73 4.4 16.5 1.0 OD1 A:ASN66 4.4 11.1 1.0 CB A:ASN75 4.4 12.7 1.0 N A:ARG62 4.4 12.7 1.0 CB A:ASN66 4.5 8.2 1.0 CA A:ARG62 4.5 13.6 1.0 N A:TYR63 4.6 13.7 1.0 CB A:SER61 4.6 10.8 1.0 O A:HOH152 4.7 7.2 1.0 N A:ASP67 4.7 8.3 1.0 N A:TRP64 4.7 11.5 1.0 C A:ASN66 4.7 8.3 1.0 C A:TYR63 4.9 12.9 1.0 O A:ALA73 4.9 16.6 1.0 C A:TRP64 4.9 10.3 1.0 CG A:ASN66 5.0 10.0 1.0

Y.Shoyama, T.Tamada, K.Nitta, I.Kumagai, R.Kuroki, T.Koshiba. Preparation and Characterization of Methyonyl-Lysine Attached Human Lysozyme Expressed in Escherichia Coli and Its Effective Conversion to the Authentic-Like Protein To Be Published.