Sodium in PDB 2zij: Crystal Structure of Human Lysozyme Expressed in E. Coli.

All present enzymatic activity of Crystal Structure of Human Lysozyme Expressed in E. Coli.:
3.2.1.17;

The structure of Crystal Structure of Human Lysozyme Expressed in E. Coli., PDB code: 2zij was solved by T.Tamada, R.Kuroki, T.Koshiba, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.50 / 1.90
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	56.600, 61.000, 33.900, 90.00, 90.00, 90.00
R / Rfree (%)	16.7 / 23.5

The binding sites of Sodium atom in the Crystal Structure of Human Lysozyme Expressed in E. Coli. (pdb code 2zij). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Human Lysozyme Expressed in E. Coli., PDB code: 2zij:

Sodium binding site 1 out of 1 in the Crystal Structure of Human Lysozyme Expressed in E. Coli.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Human Lysozyme Expressed in E. Coli. within 5.0Å range: probe atom residue distance (Å) B Occ A:Na131 b:20.2 occ:1.00 O A:CYS65 2.2 11.7 1.0 O A:HOH147 2.3 10.0 1.0 O A:SER61 2.4 10.9 1.0 O A:HOH153 2.4 9.8 1.0 O A:VAL74 2.4 11.9 1.0 C A:CYS65 3.2 11.0 1.0 CB A:ALA73 3.3 16.9 1.0 C A:VAL74 3.4 13.5 1.0 C A:SER61 3.5 11.9 1.0 CA A:ASN66 3.6 10.2 1.0 N A:ASN66 3.8 10.6 1.0 N A:VAL74 3.9 14.6 1.0 C A:ALA73 4.2 16.3 1.0 CA A:VAL74 4.2 14.1 1.0 OD1 A:ASN66 4.2 10.4 1.0 N A:ASN75 4.2 12.6 1.0 O A:ARG62 4.3 13.9 1.0 CA A:SER61 4.3 11.1 1.0 C A:ARG62 4.3 12.9 1.0 CA A:ALA73 4.3 16.3 1.0 CA A:ASN75 4.3 12.9 1.0 N A:CYS65 4.3 10.9 1.0 CA A:CYS65 4.4 10.7 1.0 CB A:ASN66 4.4 9.8 1.0 O A:HOH152 4.4 10.0 1.0 N A:ASP67 4.5 10.8 1.0 CB A:ASN75 4.5 12.5 1.0 N A:ARG62 4.5 12.7 1.0 C A:ASN66 4.6 10.2 1.0 CB A:SER61 4.6 10.5 1.0 CA A:ARG62 4.6 12.8 1.0 N A:TYR63 4.7 13.0 1.0 CG A:ASN66 4.8 10.4 1.0 O A:ALA73 4.8 15.9 1.0 N A:TRP64 4.8 11.6 1.0

Y.Shoyama, T.Tamada, K.Nitta, I.Kumagai, R.Kuroki, T.Koshiba. Preparation and Characterization of Methyonyl-Lysine Attached Human Lysozyme Expressed in Escherichia Coli and Its Effective Conversion to the Authentic-Like Protein To Be Published.