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Sodium in PDB 2xyb: Crystal Structure of A Fully Functional Laccase From the Ligninolytic Fungus Pycnoporus Cinnabarinus

Enzymatic activity of Crystal Structure of A Fully Functional Laccase From the Ligninolytic Fungus Pycnoporus Cinnabarinus

All present enzymatic activity of Crystal Structure of A Fully Functional Laccase From the Ligninolytic Fungus Pycnoporus Cinnabarinus:
1.10.3.2;

Protein crystallography data

The structure of Crystal Structure of A Fully Functional Laccase From the Ligninolytic Fungus Pycnoporus Cinnabarinus, PDB code: 2xyb was solved by K.Piontek, T.Choinowski, M.Antorini, I.Herpoel-Gimbert, D.A.Plattner, J.C.Sigoillot, M.Asther, K.Winterhalter, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 72.55 / 1.75
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 145.296, 62.902, 91.416, 90.00, 126.70, 90.00
R / Rfree (%) 16.4 / 20.8

Other elements in 2xyb:

The structure of Crystal Structure of A Fully Functional Laccase From the Ligninolytic Fungus Pycnoporus Cinnabarinus also contains other interesting chemical elements:

Zinc (Zn) 8 atoms
Copper (Cu) 4 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of A Fully Functional Laccase From the Ligninolytic Fungus Pycnoporus Cinnabarinus (pdb code 2xyb). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A Fully Functional Laccase From the Ligninolytic Fungus Pycnoporus Cinnabarinus, PDB code: 2xyb:

Sodium binding site 1 out of 1 in 2xyb

Go back to Sodium Binding Sites List in 2xyb
Sodium binding site 1 out of 1 in the Crystal Structure of A Fully Functional Laccase From the Ligninolytic Fungus Pycnoporus Cinnabarinus


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Fully Functional Laccase From the Ligninolytic Fungus Pycnoporus Cinnabarinus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na534

b:43.4
occ:1.00
OD1 A:ASN389 2.2 45.5 1.0
O A:HOH902 2.2 40.6 1.0
OD1 A:ASN331 2.3 32.9 1.0
O A:HOH1066 2.3 41.9 1.0
CG A:ASN389 3.0 46.9 1.0
CG A:ASN331 3.3 37.5 1.0
ND2 A:ASN331 3.6 40.4 1.0
ND2 A:ASN389 3.7 46.3 1.0
CB A:ASN389 3.8 38.3 1.0
O A:PHE332 3.9 37.1 1.0
CA A:ASN389 4.2 35.9 1.0
O A:ASN389 4.5 33.9 1.0
N A:PHE332 4.7 33.5 1.0
CB A:ASN331 4.7 35.2 1.0
C A:ASN389 4.9 36.1 1.0
C A:PHE332 5.0 41.4 1.0

Reference:

K.Piontek, T.Choinowski, M.Antorini, I.Herpoel-Gimbert, M.Asther, D.A.Plattner. Substrate Binding and Copper Geometry in Laccases To Be Published.
Page generated: Tue Dec 15 05:59:51 2020

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