Sodium in the structure of Crystal Structure of the Human JMJD3 Jumonji Domain (pdb 2xxz)

The binding sites of Sodium atom in the structure of Crystal Structure of the Human JMJD3 Jumonji Domain (pdb code 2xxz). This binding sites where shown with 5.0 Angstroms radius around Sodium atom. The 2xxz structure was solved by K.H.CHE, W.W.YUE, T.KROJER, J.R.C.MUNIZ, S.S.NG, A.TUMBER, M.DANIEL, N.BURGESS-BROWN, P.SAVITSKY, E.UGOCHUKWU, P.FILIPPAKOPOULOS, C.ARROWSMITH, J.WEIGELT, A.EDWARDS, C.BOUNTRA, U.OPPERMANN, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 29.2-1.8 Space group P212121 a (A) 56.757 b (A) 71.431 c (A) 159.698 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 18.324 Rfree (%) 21.578 Sodium Binding Sites: Sodium binding site 1 out of 1 in 2xxz Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 2xxz. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Glu1287, conact list: Atom Atom Distance (A) Na OE1 A:Glu1287 4.15 Na OE2 A:Glu1287 2.05 Na CD A:Glu1287 3.07 Na CG A:Glu1287 3.51 interactive model: