Sodium in PDB 2xxz: Crystal Structure of the Human JMJD3 Jumonji Domain

The structure of Crystal Structure of the Human JMJD3 Jumonji Domain, PDB code: 2xxz was solved by K.H.Che, W.W.Yue, T.Krojer, J.R.C.Muniz, S.S.Ng, A.Tumber, M.Daniel, N.Burgess-Brown, P.Savitsky, E.Ugochukwu, P.Filippakopoulos, C.Arrowsmith, J.Weigelt, A.Edwards, C.Bountra, U.Oppermann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.16 / 1.80
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	56.757, 71.431, 159.698, 90.00, 90.00, 90.00
R / Rfree (%)	18.3 / 21.6

The structure of Crystal Structure of the Human JMJD3 Jumonji Domain also contains other interesting chemical elements:

Nickel

(Ni)

3 atoms

The binding sites of Sodium atom in the Crystal Structure of the Human JMJD3 Jumonji Domain (pdb code 2xxz). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Human JMJD3 Jumonji Domain, PDB code: 2xxz:

Sodium binding site 1 out of 1 in the Crystal Structure of the Human JMJD3 Jumonji Domain


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Human JMJD3 Jumonji Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Na2495 b:37.3 occ:1.00 OE2 A:GLU1287 2.1 36.9 1.0 CD A:GLU1287 3.1 36.5 1.0 CG A:GLU1287 3.5 26.5 1.0 OE1 A:GLU1287 4.1 35.5 1.0

K.H.Che, W.W.Yue, T.Krojer, J.R.C.Muniz, S.S.Ng, A.Tumber, M.Daniel, N.Burgess-Brown, P.Savitsky, F.Von Delft, E.Ugochukwu, P.Filippakopoulos, C.Arrowsmith, J.Weigelt, A.Edwards, C.Bountra, U.Oppermann. Crystal Structure of the Human JMJD3 Jumonji Domain To Be Published.