Atomistry » Sodium » PDB 2xjr-2xzi » 2xxz
Atomistry »
  Sodium »
    PDB 2xjr-2xzi »
      2xxz »

Sodium in PDB 2xxz: Crystal Structure of the Human JMJD3 Jumonji Domain

Protein crystallography data

The structure of Crystal Structure of the Human JMJD3 Jumonji Domain, PDB code: 2xxz was solved by K.H.Che, W.W.Yue, T.Krojer, J.R.C.Muniz, S.S.Ng, A.Tumber, M.Daniel, N.Burgess-Brown, P.Savitsky, E.Ugochukwu, P.Filippakopoulos, C.Arrowsmith, J.Weigelt, A.Edwards, C.Bountra, U.Oppermann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.16 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 56.757, 71.431, 159.698, 90.00, 90.00, 90.00
R / Rfree (%) 18.3 / 21.6

Other elements in 2xxz:

The structure of Crystal Structure of the Human JMJD3 Jumonji Domain also contains other interesting chemical elements:

Nickel (Ni) 3 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of the Human JMJD3 Jumonji Domain (pdb code 2xxz). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Human JMJD3 Jumonji Domain, PDB code: 2xxz:

Sodium binding site 1 out of 1 in 2xxz

Go back to Sodium Binding Sites List in 2xxz
Sodium binding site 1 out of 1 in the Crystal Structure of the Human JMJD3 Jumonji Domain


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Human JMJD3 Jumonji Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na2495

b:37.3
occ:1.00
OE2 A:GLU1287 2.1 36.9 1.0
CD A:GLU1287 3.1 36.5 1.0
CG A:GLU1287 3.5 26.5 1.0
OE1 A:GLU1287 4.1 35.5 1.0

Reference:

K.H.Che, W.W.Yue, T.Krojer, J.R.C.Muniz, S.S.Ng, A.Tumber, M.Daniel, N.Burgess-Brown, P.Savitsky, F.Von Delft, E.Ugochukwu, P.Filippakopoulos, C.Arrowsmith, J.Weigelt, A.Edwards, C.Bountra, U.Oppermann. Crystal Structure of the Human JMJD3 Jumonji Domain To Be Published.
Page generated: Tue Dec 15 05:59:52 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy