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Sodium in PDB 2xmm: Visualising the Metal-Binding Versatility of Copper Trafficking Sites: H61Y ATX1 Side-to-Side

Protein crystallography data

The structure of Visualising the Metal-Binding Versatility of Copper Trafficking Sites: H61Y ATX1 Side-to-Side, PDB code: 2xmm was solved by A.Badarau, S.J.Firbank, A.A.Mccarthy, M.J.Banfield, C.Dennison, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 53.22 / 1.65
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 62.630, 41.400, 55.580, 90.00, 106.76, 90.00
R / Rfree (%) 16.544 / 20.037

Other elements in 2xmm:

The structure of Visualising the Metal-Binding Versatility of Copper Trafficking Sites: H61Y ATX1 Side-to-Side also contains other interesting chemical elements:

Copper (Cu) 4 atoms
Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Visualising the Metal-Binding Versatility of Copper Trafficking Sites: H61Y ATX1 Side-to-Side (pdb code 2xmm). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Visualising the Metal-Binding Versatility of Copper Trafficking Sites: H61Y ATX1 Side-to-Side, PDB code: 2xmm:

Sodium binding site 1 out of 1 in 2xmm

Go back to Sodium Binding Sites List in 2xmm
Sodium binding site 1 out of 1 in the Visualising the Metal-Binding Versatility of Copper Trafficking Sites: H61Y ATX1 Side-to-Side


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Visualising the Metal-Binding Versatility of Copper Trafficking Sites: H61Y ATX1 Side-to-Side within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1069

b:15.9
occ:0.50
OD1 A:ASP27 2.3 14.9 1.0
OE1 A:GLN29 2.3 18.5 1.0
O A:HOH2064 2.4 19.4 0.5
CG A:ASP27 3.3 16.9 1.0
CD A:GLN29 3.5 15.0 1.0
OD2 A:ASP27 4.0 18.5 1.0
CB A:GLN29 4.1 14.8 1.0
CA A:ASP27 4.1 16.1 1.0
CB A:ASP27 4.1 16.2 1.0
N A:GLN29 4.2 14.8 1.0
O A:HOH2065 4.2 14.3 0.5
O A:HOH2063 4.2 26.2 1.0
N A:ALA28 4.3 15.0 1.0
CG A:GLN29 4.3 15.3 1.0
C A:ASP27 4.4 15.5 1.0
NE2 A:GLN29 4.6 16.0 1.0
CA A:GLN29 4.7 14.2 1.0
CB A:ALA46 5.0 20.3 1.0

Reference:

A.Badarau, S.J.Firbank, A.A.Mccarthy, M.J.Banfield, C.Dennison. Visualizing the Metal-Binding Versatility of Copper Trafficking Sites . Biochemistry V. 49 7798 2010.
ISSN: ISSN 0006-2960
PubMed: 20726513
DOI: 10.1021/BI101064W
Page generated: Thu Oct 29 04:19:09 2020

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