Sodium in PDB 2xmk: Visualising the Metal-Binding Versatility of Copper Trafficking Sites: ATX1 Side-to-Side (Anaerobic)

The structure of Visualising the Metal-Binding Versatility of Copper Trafficking Sites: ATX1 Side-to-Side (Anaerobic), PDB code: 2xmk was solved by A.Badarau, S.J.Firbank, A.A.Mccarthy, M.J.Banfield, C.Dennison, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	53.22 / 1.35
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	62.991, 41.709, 55.791, 90.00, 107.49, 90.00
R / Rfree (%)	12.94 / 15.274

The structure of Visualising the Metal-Binding Versatility of Copper Trafficking Sites: ATX1 Side-to-Side (Anaerobic) also contains other interesting chemical elements:

Copper	(Cu)	4 atoms
Chlorine	(Cl)	2 atoms

The binding sites of Sodium atom in the Visualising the Metal-Binding Versatility of Copper Trafficking Sites: ATX1 Side-to-Side (Anaerobic) (pdb code 2xmk). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Visualising the Metal-Binding Versatility of Copper Trafficking Sites: ATX1 Side-to-Side (Anaerobic), PDB code: 2xmk:

Sodium binding site 1 out of 1 in the Visualising the Metal-Binding Versatility of Copper Trafficking Sites: ATX1 Side-to-Side (Anaerobic)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Visualising the Metal-Binding Versatility of Copper Trafficking Sites: ATX1 Side-to-Side (Anaerobic) within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1105 b:9.1 occ:0.50 O A:HOH3069 2.2 18.1 0.5 OE1 A:GLN1029 2.3 8.8 1.0 OD1 A:ASP1027 2.3 8.4 1.0 CG A:ASP1027 3.3 9.7 1.0 CD A:GLN1029 3.4 7.8 1.0 OD2 A:ASP1027 4.0 15.1 1.0 CB A:GLN1029 4.1 7.7 1.0 O A:HOH3073 4.1 15.8 0.5 CG A:GLN1029 4.2 9.1 1.0 CB A:ASP1027 4.2 9.2 1.0 N A:GLN1029 4.2 6.8 1.0 CA A:ASP1027 4.2 8.5 1.0 O A:HOH3070 4.3 17.9 0.5 N A:ALA1028 4.3 8.3 1.0 C A:ASP1027 4.5 8.1 1.0 NE2 A:GLN1029 4.5 10.4 1.0 CA A:GLN1029 4.8 6.9 1.0 CB A:ALA1046 4.9 13.4 1.0

A.Badarau, S.J.Firbank, A.A.Mccarthy, M.J.Banfield, C.Dennison. Visualizing the Metal-Binding Versatility of Copper Trafficking Sites . Biochemistry V. 49 7798 2010.
ISSN: ISSN 0006-2960
PubMed: 20726513
DOI: 10.1021/BI101064W