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Sodium in PDB 2xmj: Visualising the Metal-Binding Versatility of Copper Trafficking Sites: ATX1 Side-to-Side (Aerobic)

Protein crystallography data

The structure of Visualising the Metal-Binding Versatility of Copper Trafficking Sites: ATX1 Side-to-Side (Aerobic), PDB code: 2xmj was solved by A.Badarau, S.J.Firbank, A.A.Mccarthy, M.J.Banfield, C.Dennison, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.08
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 63.460, 41.654, 55.832, 90.00, 107.70, 90.00
R / Rfree (%) n/a / 14.9

Other elements in 2xmj:

The structure of Visualising the Metal-Binding Versatility of Copper Trafficking Sites: ATX1 Side-to-Side (Aerobic) also contains other interesting chemical elements:

Copper (Cu) 4 atoms
Chlorine (Cl) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Visualising the Metal-Binding Versatility of Copper Trafficking Sites: ATX1 Side-to-Side (Aerobic) (pdb code 2xmj). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Visualising the Metal-Binding Versatility of Copper Trafficking Sites: ATX1 Side-to-Side (Aerobic), PDB code: 2xmj:

Sodium binding site 1 out of 1 in 2xmj

Go back to Sodium Binding Sites List in 2xmj
Sodium binding site 1 out of 1 in the Visualising the Metal-Binding Versatility of Copper Trafficking Sites: ATX1 Side-to-Side (Aerobic)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Visualising the Metal-Binding Versatility of Copper Trafficking Sites: ATX1 Side-to-Side (Aerobic) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1069

b:4.6
occ:0.50
O A:HOH2067 2.3 11.9 0.5
OE1 A:GLN29 2.3 6.0 1.0
OD1 A:ASP27 2.4 5.0 1.0
CG A:ASP27 3.3 5.8 1.0
CD A:GLN29 3.5 5.0 1.0
CB A:GLN29 4.0 6.2 1.0
OD2 A:ASP27 4.1 9.8 1.0
CG A:GLN29 4.2 8.0 1.0
O A:HOH2071 4.2 15.8 0.5
CB A:ASP27 4.2 5.2 1.0
N A:GLN29 4.2 4.5 1.0
CA A:ASP27 4.2 5.2 1.0
N A:ALA28 4.3 5.4 1.0
C A:ASP27 4.5 5.0 1.0
NE2 A:GLN29 4.5 8.4 1.0
O A:HOH2028 4.7 7.2 0.3
CA A:GLN29 4.8 4.4 1.0
O A:HOH2068 4.9 2.9 0.2
CB A:ALA46 4.9 9.9 1.0

Reference:

A.Badarau, S.J.Firbank, A.A.Mccarthy, M.J.Banfield, C.Dennison. Visualizing the Metal-Binding Versatility of Copper Trafficking Sites . Biochemistry V. 49 7798 2010.
ISSN: ISSN 0006-2960
PubMed: 20726513
DOI: 10.1021/BI101064W
Page generated: Tue Dec 15 05:59:34 2020

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