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Sodium in PDB 2xjw: Lysozyme-Co Releasing Molecule Adduct

Enzymatic activity of Lysozyme-Co Releasing Molecule Adduct

All present enzymatic activity of Lysozyme-Co Releasing Molecule Adduct:
3.2.1.17;

Protein crystallography data

The structure of Lysozyme-Co Releasing Molecule Adduct, PDB code: 2xjw was solved by T.Santos-Silva, A.Mukhopadhyay, M.J.Romao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.76 / 1.67
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.400, 78.400, 36.970, 90.00, 90.00, 90.00
R / Rfree (%) 16.9 / 20.8

Other elements in 2xjw:

The structure of Lysozyme-Co Releasing Molecule Adduct also contains other interesting chemical elements:

Ruthenium (Ru) 3 atoms
Chlorine (Cl) 3 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Lysozyme-Co Releasing Molecule Adduct (pdb code 2xjw). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Lysozyme-Co Releasing Molecule Adduct, PDB code: 2xjw:

Sodium binding site 1 out of 1 in 2xjw

Go back to Sodium Binding Sites List in 2xjw
Sodium binding site 1 out of 1 in the Lysozyme-Co Releasing Molecule Adduct


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Lysozyme-Co Releasing Molecule Adduct within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1133

b:23.9
occ:1.00
O A:SER60 2.2 19.4 1.0
O A:CYS64 2.4 15.5 1.0
O A:HOH2085 2.4 16.1 1.0
O A:HOH2084 2.5 21.5 1.0
O A:ARG73 2.5 24.4 1.0
OG A:SER72 2.5 26.9 1.0
CB A:SER72 3.3 27.5 1.0
C A:SER60 3.4 18.2 1.0
C A:CYS64 3.5 13.1 1.0
C A:ARG73 3.6 25.5 1.0
CA A:ASN65 3.9 15.1 1.0
CA A:SER60 4.0 16.1 1.0
N A:ARG73 4.1 26.8 1.0
C A:SER72 4.1 28.4 1.0
N A:ASN65 4.1 15.2 1.0
CB A:SER60 4.2 14.4 1.0
CA A:SER72 4.3 28.5 1.0
N A:CYS64 4.4 15.6 1.0
N A:ASN74 4.4 23.6 1.0
CA A:ARG73 4.4 26.0 1.0
N A:ARG61 4.5 19.3 1.0
O A:ARG61 4.5 24.4 1.0
C A:ARG61 4.5 23.9 1.0
CA A:ASN74 4.5 21.8 1.0
O A:SER72 4.6 26.6 1.0
CA A:CYS64 4.6 15.6 1.0
N A:ASP66 4.6 14.5 1.0
OD1 A:ASN65 4.6 20.2 1.0
CB A:THR69 4.7 18.0 1.0
O A:HOH2088 4.7 11.5 1.0
CA A:ARG61 4.7 23.1 1.0
CB A:ASN74 4.7 22.2 1.0
CB A:ASN65 4.8 15.8 1.0
C A:ASN65 4.8 14.6 1.0
N A:TRP62 4.8 20.1 1.0
N A:TRP63 5.0 15.4 1.0

Reference:

T.Santos-Silva, A.Mukhopadhyay, J.D.Seixas, G.J.Bernardes, C.C.Romao, M.J.Romao. Corm-3 Reactivity Toward Proteins: the Crystal Structure of A Ru(II) Dicarbonyl-Lysozyme Complex. J.Am.Chem.Soc. V. 133 1192 2011.
ISSN: ISSN 0002-7863
PubMed: 21204537
DOI: 10.1021/JA108820S
Page generated: Tue Dec 15 05:59:30 2020

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