Sodium in the structure of Lysozyme-Co Releasing Molecule Adduct (pdb 2xjw)

The binding sites of Sodium atom in the structure of Lysozyme-Co Releasing Molecule Adduct (pdb code 2xjw). This binding sites where shown with 5.0 Angstroms radius around Sodium atom. The 2xjw structure was solved by T.SANTOS-SILVA, A.MUKHOPADKYAY, M.J.ROMAO, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 30.8-1.7 Space group P43212 a (A) 78.400 b (A) 78.400 c (A) 36.970 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 16.852 Rfree (%) 20.763 Sodium Binding Sites: Sodium binding site 1 out of 1 in 2xjw Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 2xjw. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Ser60, A: Arg61, A: Trp62, A: Trp63, A: Cys64, A: Asn65, A: Asp66, A: Thr69, A: Ser72, A: Arg73, A: Asn74, A: Hoh2084, A: Hoh2085, A: Hoh2088, conact list: Atom Atom Distance (A) Na O A:Ser60 2.21 Na CB A:Ser60 4.16 Na C A:Ser60 3.38 Na CA A:Ser60 3.97 Na O A:Arg61 4.48 Na N A:Arg61 4.47 Na C A:Arg61 4.50 Na CA A:Arg61 4.73 Na N A:Trp62 4.83 Na N A:Trp63 4.99 Na O A:Cys64 2.40 Na N A:Cys64 4.40 Na C A:Cys64 3.47 Na CA A:Cys64 4.59 Na N A:Asn65 4.13 Na CB A:Asn65 4.76 Na C A:Asn65 4.80 Na OD1 A:Asn65 4.64 Na CA A:Asn65 3.89 Na N A:Asp66 4.61 Na CB A:Thr69 4.69 Na O A:Ser72 4.58 Na CB A:Ser72 3.26 Na OG A:Ser72 2.55 Na C A:Ser72 4.11 Na CA A:Ser72 4.30 Na O A:Arg73 2.45 Na N A:Arg73 4.05 Na C A:Arg73 3.55 Na CA A:Arg73 4.41 Na N A:Asn74 4.40 Na CB A:Asn74 4.74 Na CA A:Asn74 4.53 Na O A:Hoh2084 2.45 Na O A:Hoh2085 2.44 Na O A:Hoh2088 4.72 interactive model: