Sodium in the structure of X-Ray Structure Of The N-Terminal Domain of the Flocculin FLO5 From Saccharomyces Cerevisiae in Complex With Calcium and MAN5(D1) (pdb 2xjt)

The binding sites of Sodium atom in the structure of X-Ray Structure Of The N-Terminal Domain of the Flocculin FLO5 From Saccharomyces Cerevisiae in Complex With Calcium and MAN5(D1) (pdb code 2xjt). This binding sites where shown with 5.0 Angstroms radius around Sodium atom. The 2xjt structure was solved by M.VEELDERS, S.BRUECKNER, D.OTT, C.UNVERZAGT, H.-U.MOESCH, L.-O.ESSEN, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 19.3-1.2 Space group P212121 a (A) 46.320 b (A) 62.010 c (A) 106.360 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 13.045 Rfree (%) 15.316 Sodium Binding Sites: Sodium binding site 1 out of 2 in 2xjt Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 2xjt. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Asp82, A: Tyr83, A: Asn84, A: Pro97, A: Gln98, A: Glu99, A: Trp228, A: Thr230, A: Hoh2064, A: Hoh2154, A: Hoh2158, A: Hoh2182, A: Hoh2183, A: Hoh2184, A: Hoh2186, A: Hoh2332, conact list: Atom Atom Distance (A) Na O A:Asp82 4.93 Na CB A:Asp82 4.64 Na OD2 A:Asp82 3.91 Na C A:Asp82 4.68 Na OD1 A:Asp82 2.27 Na CG A:Asp82 3.41 Na CA A:Asp82 4.76 Na O A:Tyr83 4.55 Na N A:Tyr83 4.93 Na C A:Tyr83 4.83 Na CB A:Asn84 4.79 Na ND2 A:Asn84 3.67 Na OD1 A:Asn84 2.47 Na CG A:Asn84 3.41 Na CA A:Pro97 4.77 Na NE2 A:Gln98 3.72 Na N A:Gln98 4.55 Na OE1 A:Gln98 2.33 Na CD A:Gln98 3.33 Na CG A:Gln98 4.68 Na OE1 A:Glu99 4.88 Na CD1 A:Trp228 4.66 Na OG1 A:Thr230 4.52 Na O A:Hoh2064 4.58 Na O A:Hoh2154 2.59 Na O A:Hoh2158 2.39 Na O A:Hoh2182 2.07 Na O A:Hoh2183 3.59 Na O A:Hoh2184 2.42 Na O A:Hoh2186 4.62 Na O A:Hoh2332 2.45 interactive model: Sodium binding site 2 out of 2 in 2xjt Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Sodium in the PDB 2xjt. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Pro86, A: Thr93, A: Phe94, A: Pro95, A: Hoh2073, A: Hoh2082, A: Hoh2103, A: Hoh2161, A: Hoh2162, A: Hoh2177, A: Hoh2224, conact list: Atom Atom Distance (A) Na N A:Pro86 4.35 Na CB A:Pro86 3.64 Na CD A:Pro86 4.67 Na CG A:Pro86 3.81 Na CA A:Pro86 3.80 Na O A:Thr93 4.46 Na CG2 A:Thr93 4.10 Na C A:Thr93 4.50 Na O A:Phe94 4.15 Na N A:Phe94 4.30 Na C A:Phe94 3.67 Na CA A:Phe94 4.08 Na N A:Pro95 3.50 Na CB A:Pro95 4.18 Na CD A:Pro95 3.72 Na CG A:Pro95 4.48 Na CA A:Pro95 3.91 Na O A:Hoh2073 3.03 Na O A:Hoh2082 4.66 Na O A:Hoh2103 3.23 Na O A:Hoh2161 4.89 Na O A:Hoh2162 3.04 Na O A:Hoh2177 2.98 Na O A:Hoh2224 4.49 interactive model: