Sodium in PDB 2xio: Structure of Putative Deoxyribonuclease TATDN1 Isoform A

The structure of Structure of Putative Deoxyribonuclease TATDN1 Isoform A, PDB code: 2xio was solved by J.R.C.Muniz, R.Cocking, S.Puranik, T.Krojer, J.Raynor, M.Vollmar, F.Vondelft, C.H.Arrowsmith, A.M.Edwards, J.Weigelt, C.Bountra, W.W.Yue, K.L.Kavanagh, U.Oppermann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	17.42 / 1.19
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	38.480, 50.940, 155.240, 90.00, 90.00, 90.00
R / Rfree (%)	17.2 / 19.2

The structure of Structure of Putative Deoxyribonuclease TATDN1 Isoform A also contains other interesting chemical elements:

Nickel

(Ni)

1 atom

The binding sites of Sodium atom in the Structure of Putative Deoxyribonuclease TATDN1 Isoform A (pdb code 2xio). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Putative Deoxyribonuclease TATDN1 Isoform A, PDB code: 2xio:

Sodium binding site 1 out of 1 in the Structure of Putative Deoxyribonuclease TATDN1 Isoform A


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Putative Deoxyribonuclease TATDN1 Isoform A within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1297 b:15.5 occ:1.00 OG A:SER235 2.3 6.8 0.5 O A:SER230 2.3 11.2 1.0 O A:HIS232 2.4 9.9 1.0 C A:SER230 3.3 11.0 1.0 CB A:SER235 3.4 12.5 0.5 CB A:SER235 3.5 8.3 0.5 C A:HIS232 3.5 9.8 1.0 O A:HOH2444 3.8 34.7 1.0 N A:HIS232 3.9 10.2 1.0 N A:SER235 4.0 9.4 0.5 N A:SER235 4.0 9.2 0.5 CA A:SER230 4.0 9.6 1.0 CA A:SER235 4.1 9.5 0.5 C A:THR231 4.1 14.0 1.0 CA A:SER235 4.2 8.3 0.5 N A:LYS236 4.3 9.2 0.5 N A:THR231 4.3 10.7 1.0 N A:LYS236 4.3 8.7 0.5 CA A:HIS232 4.3 9.7 1.0 OG A:SER235 4.3 19.4 0.5 N A:ALA233 4.4 9.8 1.0 O A:LYS229 4.4 9.4 1.0 CA A:THR231 4.5 10.8 1.0 O A:HOH2236 4.5 39.6 1.0 C A:ALA233 4.5 10.5 1.0 O A:HOH2453 4.5 18.5 1.0 CA A:ALA233 4.5 9.7 1.0 O A:ALA233 4.6 12.5 1.0 C A:SER235 4.6 10.3 0.5 O A:HOH2447 4.6 34.2 1.0 C A:SER235 4.7 9.8 0.5 O A:THR231 4.7 15.1 1.0 CB A:SER230 4.8 12.3 1.0 N A:GLY234 5.0 9.3 1.0

J.R.C.Muniz, R.Cocking, S.Puranik, T.Krojer, J.Raynor, M.Vollmar, F.Von Delft, C.H.Arrowsmith, A.M.Edwards, J.Weigelt, C.Bountra, W.W.Yue, K.L.Kavanagh, U.Oppermann. Structure of Putative Deoxyribonuclease TATDN1 Isoform A To Be Published.