Sodium in PDB 2x9x: Structure of the Pilus Backbone (Rrgb) From Streptococcus Pneumoniae

The structure of Structure of the Pilus Backbone (Rrgb) From Streptococcus Pneumoniae, PDB code: 2x9x was solved by G.Spraggon, E.Koesema, M.Scarselli, E.Malito, M.Biagini, N.Norais, C.Emolo, M.A.Barocchi, F.Giusti, M.Hilleringmann, R.Rappuoli, S.Lesley, A.Covacci, V.Masignani, I.Ferlenghi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.665 / 1.50
Space group	P 61 2 2
Cell size a, b, c (Å), α, β, γ (°)	142.563, 142.563, 89.408, 90.00, 90.00, 120.00
R / Rfree (%)	16.79 / 20.03

The binding sites of Sodium atom in the Structure of the Pilus Backbone (Rrgb) From Streptococcus Pneumoniae (pdb code 2x9x). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of the Pilus Backbone (Rrgb) From Streptococcus Pneumoniae, PDB code: 2x9x:

Sodium binding site 1 out of 1 in the Structure of the Pilus Backbone (Rrgb) From Streptococcus Pneumoniae


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of the Pilus Backbone (Rrgb) From Streptococcus Pneumoniae within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1625 b:20.1 occ:1.00 O A:VAL320 2.5 12.9 1.0 OD1 A:ASP319 2.5 21.7 1.0 OE2 A:GLU441 2.6 21.6 1.0 OD1 A:ASP438 2.8 31.2 1.0 O A:HOH2293 3.2 34.7 1.0 O A:HOH2292 3.3 26.1 1.0 CG A:ASP438 3.3 34.1 1.0 CD A:GLU441 3.5 20.5 1.0 C A:VAL320 3.5 13.1 1.0 N A:VAL320 3.5 12.6 1.0 OE1 A:GLU441 3.6 20.4 1.0 CG A:ASP319 3.7 20.7 1.0 O A:PRO439 3.7 21.8 1.0 OD2 A:ASP438 3.7 40.9 1.0 O A:HOH2142 3.7 25.0 1.0 C A:ASP319 4.0 14.2 1.0 CA A:VAL320 4.1 12.0 0.7 CA A:VAL320 4.1 13.8 0.3 OG1 A:THR321 4.1 14.6 1.0 CD A:PRO439 4.2 22.0 1.0 CA A:ASP319 4.2 14.6 1.0 CA A:ASP438 4.2 19.0 1.0 CB A:ASP438 4.3 23.5 1.0 N A:PRO439 4.3 21.1 1.0 C A:ASP438 4.4 23.4 1.0 OD2 A:ASP319 4.4 20.8 1.0 N A:THR321 4.5 12.1 1.0 CB A:ASP319 4.6 17.9 1.0 O A:HOH2289 4.6 24.4 1.0 CG A:PRO439 4.6 22.5 1.0 CG2 A:VAL320 4.6 12.6 0.3 O A:ASP319 4.7 14.1 1.0 OG1 A:THR333 4.7 13.0 1.0 C A:PRO439 4.8 21.6 1.0 CA A:THR321 4.8 13.5 1.0 CG A:GLU441 4.8 20.3 1.0 CB A:VAL320 5.0 14.6 0.7

G.Spraggon, E.Koesema, M.Scarselli, E.Malito, M.Biagini, N.Norais, C.Emolo, M.A.Barocchi, F.Giusti, M.Hilleringmann, R.Rappuoli, S.Lesley, A.Covacci, V.Masignani, I.Ferlenghi. Supramolecular Organization of the Repetitive Backbone Unit of the Streptococcus Pneumoniae Pilus. Plos One V. 5 919 2010.
ISSN: ISSN 1932-6203
PubMed: 20559564
DOI: 10.1371/JOURNAL.PONE.0010919