Atomistry » Sodium » PDB 2wd0-2wof » 2wmz
Atomistry »
  Sodium »
    PDB 2wd0-2wof »
      2wmz »

Sodium in PDB 2wmz: Structure of A Mutated Tolc

Protein crystallography data

The structure of Structure of A Mutated Tolc, PDB code: 2wmz was solved by P.Hinchliffe, X.Y.Pei, M.F.Symmons, E.Koronakis, C.Hughes, V.Koronakis, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.93 / 2.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 124.690, 135.220, 136.470, 90.00, 90.00, 90.00
R / Rfree (%) 25.8 / 30.1

Other elements in 2wmz:

The structure of Structure of A Mutated Tolc also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of A Mutated Tolc (pdb code 2wmz). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of A Mutated Tolc, PDB code: 2wmz:

Sodium binding site 1 out of 1 in 2wmz

Go back to Sodium Binding Sites List in 2wmz
Sodium binding site 1 out of 1 in the Structure of A Mutated Tolc


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of A Mutated Tolc within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na1430

b:39.5
occ:1.00
OE1 B:GLU180 3.0 37.3 1.0
O B:HOH2006 3.3 29.9 1.0
OD1 C:ASN332 3.6 30.6 1.0
CD B:GLU180 3.7 28.6 1.0
CG B:GLU180 4.1 33.8 1.0
CG C:ASN332 4.4 27.2 1.0
ND2 C:ASN332 4.4 33.2 1.0
CB B:ASP176 4.4 36.5 1.0
O B:ASP176 4.5 36.3 1.0
CG B:ASP176 4.5 52.0 1.0
OD2 B:ASP176 4.5 54.7 1.0
NE C:ARG328 4.6 44.1 1.0
NH2 C:ARG328 4.6 57.6 1.0
OE2 B:GLU180 4.7 46.7 1.0
CA B:ASP176 4.8 37.4 1.0
C B:ASP176 4.8 44.6 1.0

Reference:

X.Y.Pei, P.Hinchliffe, M.F.Symmons, E.Koronakis, R.Benz, C.Hughes, V.Koronakis. Structures of Sequential Open States in A Symmetrical Opening Transition of the Tolc Exit Duct. Proc.Natl.Acad.Sci.Usa V. 108 2112 2011.
ISSN: ISSN 0027-8424
PubMed: 21245342
DOI: 10.1073/PNAS.1012588108
Page generated: Tue Dec 15 05:57:52 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy