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Sodium in the structure of Structure of A Mutated Tolc (pdb 2wmz)

The binding sites of Sodium atom in the structure of Structure of A Mutated Tolc (pdb code 2wmz). This binding sites where shown with 5.0 Angstroms radius around Sodium atom.
The 2wmz structure was solved by P.HINCHLIFFE, X.Y.PEI, M.F.SYMMONS, E.KORONAKIS, C.HUGHES, V.KORONAKIS, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)29.9-2.9
Space groupP212121
a (A)124.690
b (A)135.220
c (A)136.470
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)25.8
Rfree (%)30.1

Sodium Binding Sites:

Sodium binding site 1 out of 1 in 2wmz

Sodium binding site 1 out of 1 in 2wmz
Click to enlarge
stereopicture of Sodium binding site 1 out of 1 in 2wmz
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 2wmz. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Asp176, B: Glu180, C: Arg328, C: Asn332, B: Hoh2006,

conact list:

AtomAtomDistance (A)
NaO B:Asp1764.48
NaCB B:Asp1764.40
NaOD2 B:Asp1764.54
NaC B:Asp1764.77
NaCG B:Asp1764.49
NaCA B:Asp1764.77
NaOE1 B:Glu1802.96
NaOE2 B:Glu1804.65
NaCD B:Glu1803.73
NaCG B:Glu1804.12
NaNE C:Arg3284.57
NaNH2 C:Arg3284.63
NaND2 C:Asn3324.40
NaOD1 C:Asn3323.56
NaCG C:Asn3324.39
NaO B:Hoh20063.29

interactive model:

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