Atomistry » Sodium » PDB 2wd0-2wof » 2wis
Atomistry »
  Sodium »
    PDB 2wd0-2wof »
      2wis »

Sodium in PDB 2wis: Fluorescent Protein Killerred in the Bleached State

Protein crystallography data

The structure of Fluorescent Protein Killerred in the Bleached State, PDB code: 2wis was solved by P.Carpentier, S.Violot, L.Blanchoin, D.Bourgeois, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.81 / 2.35
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 71.940, 73.400, 75.230, 90.00, 90.00, 90.00
R / Rfree (%) 22.2 / 30.2

Sodium Binding Sites:

The binding sites of Sodium atom in the Fluorescent Protein Killerred in the Bleached State (pdb code 2wis). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Fluorescent Protein Killerred in the Bleached State, PDB code: 2wis:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 2wis

Go back to Sodium Binding Sites List in 2wis
Sodium binding site 1 out of 2 in the Fluorescent Protein Killerred in the Bleached State


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Fluorescent Protein Killerred in the Bleached State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1230

b:64.8
occ:1.00
N A:SER79 3.3 42.0 1.0
O A:GLY77 3.7 42.9 1.0
CA A:PRO192 3.7 38.2 1.0
CB A:SER79 3.8 42.4 1.0
CB A:PRO192 3.9 38.1 1.0
CA A:ILE78 3.9 41.7 1.0
N A:GLY193 4.0 35.6 1.0
C A:ILE78 4.1 41.9 1.0
CA A:SER79 4.2 42.3 1.0
C A:PRO192 4.4 36.9 1.0
CG2 A:ILE78 4.5 39.4 1.0
C A:GLY77 4.6 43.4 1.0
N A:ILE78 4.7 42.0 1.0
CB A:ILE78 4.7 41.6 1.0
N A:PRO192 4.9 39.2 1.0
OE2 A:GLU190 4.9 48.4 1.0

Sodium binding site 2 out of 2 in 2wis

Go back to Sodium Binding Sites List in 2wis
Sodium binding site 2 out of 2 in the Fluorescent Protein Killerred in the Bleached State


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Fluorescent Protein Killerred in the Bleached State within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na1234

b:62.3
occ:1.00
N B:GLY193 3.3 46.6 1.0
CA B:PRO192 3.6 49.5 1.0
N B:SER79 3.6 53.4 1.0
C B:PRO192 3.9 48.0 1.0
CB B:PRO192 4.0 49.5 1.0
CA B:ILE78 4.0 55.0 1.0
O B:GLY77 4.1 55.5 1.0
C B:ILE78 4.3 54.1 1.0
CB B:SER79 4.4 53.1 1.0
CA B:GLY193 4.4 45.2 1.0
CG1 B:ILE78 4.4 55.7 1.0
CA B:SER79 4.6 53.0 1.0
CB B:ILE78 4.7 55.1 1.0
N B:PRO192 4.8 50.8 1.0
CG2 B:ILE78 4.9 55.1 1.0
C B:GLY77 5.0 55.4 1.0
O B:GLY193 5.0 43.5 1.0

Reference:

P.Carpentier, S.Violot, L.Blanchoin, D.Bourgeois. Structural Basis For the Phototoxicity of the Fluorescent Protein Killerred. Febs Lett. V. 583 2839 2009.
ISSN: ISSN 0014-5793
PubMed: 19646983
DOI: 10.1016/J.FEBSLET.2009.07.041
Page generated: Mon Oct 7 04:41:21 2024

Last articles

Cl in 7XES
Cl in 7XEQ
Cl in 7XE9
Cl in 7XCA
Cl in 7XBI
Cl in 7XB9
Cl in 7XB8
Cl in 7XAR
Cl in 7X97
Cl in 7XB7
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy