Sodium in PDB 2wiq: Fluorescent Protein Killerred in the Native State

The structure of Fluorescent Protein Killerred in the Native State, PDB code: 2wiq was solved by P.Carpentier, S.Violot, L.Blanchoin, D.Bourgeois, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	54.31 / 2.00
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	71.490, 73.670, 80.260, 90.00, 90.00, 90.00
R / Rfree (%)	17.1 / 23.6

The binding sites of Sodium atom in the Fluorescent Protein Killerred in the Native State (pdb code 2wiq). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Fluorescent Protein Killerred in the Native State, PDB code: 2wiq:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Fluorescent Protein Killerred in the Native State


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Fluorescent Protein Killerred in the Native State within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1232 b:38.4 occ:1.00 N A:SER79 3.5 19.2 1.0 OG A:SER79 3.7 26.8 1.0 CA A:PRO192 3.7 16.3 1.0 N A:GLY193 3.8 15.1 1.0 O A:GLY77 4.0 24.4 1.0 CB A:PRO192 4.1 15.8 1.0 CA A:ILE78 4.1 20.4 1.0 CB A:SER79 4.2 19.2 1.0 C A:PRO192 4.3 15.8 1.0 OE2 A:GLU190 4.3 39.6 1.0 C A:ILE78 4.3 19.4 1.0 CA A:SER79 4.5 19.6 1.0 CG2 A:ILE78 4.7 21.2 1.0 C A:GLY77 4.8 23.7 1.0 O A:ILE191 4.8 17.5 1.0 N A:PRO192 4.8 16.6 1.0 N A:ILE78 4.9 21.8 1.0 CA A:GLY193 5.0 13.9 1.0

Sodium binding site 2 out of 2 in the Fluorescent Protein Killerred in the Native State


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Fluorescent Protein Killerred in the Native State within 5.0Å range: probe atom residue distance (Å) B Occ B:Na1234 b:31.6 occ:1.00 OG B:SER79 3.5 21.8 1.0 N B:SER79 3.5 20.0 1.0 N B:GLY193 3.9 20.8 1.0 CA B:PRO192 3.9 21.7 1.0 CB B:SER79 4.0 21.0 1.0 O B:GLY77 4.2 22.6 1.0 CA B:ILE78 4.2 20.6 1.0 C B:ILE78 4.3 20.2 1.0 CB B:PRO192 4.4 21.7 1.0 CA B:SER79 4.4 20.0 1.0 C B:PRO192 4.5 20.6 1.0 OE1 B:GLU190 4.8 42.2 1.0 CG2 B:ILE78 4.8 19.9 1.0 C B:GLY77 4.9 22.2 1.0 O B:HOH2062 4.9 42.8 1.0 CA B:GLY193 5.0 18.5 1.0 N B:PRO192 5.0 21.9 1.0 O B:ILE191 5.0 22.9 1.0

P.Carpentier, S.Violot, L.Blanchoin, D.Bourgeois. Structural Basis For the Phototoxicity of the Fluorescent Protein Killerred. Febs Lett. V. 583 2839 2009.
ISSN: ISSN 0014-5793
PubMed: 19646983
DOI: 10.1016/J.FEBSLET.2009.07.041