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Sodium in PDB 2whj: Understanding How Diverse Mannanases Recognise Heterogeneous Substrates

Enzymatic activity of Understanding How Diverse Mannanases Recognise Heterogeneous Substrates

All present enzymatic activity of Understanding How Diverse Mannanases Recognise Heterogeneous Substrates:
3.2.1.78;

Protein crystallography data

The structure of Understanding How Diverse Mannanases Recognise Heterogeneous Substrates, PDB code: 2whj was solved by L.E.Tailford, V.M.A.Ducros, J.E.Flint, S.M.Roberts, C.Morland, D.L.Zechel, N.Smith, M.E.Bjornvad, T.V.Borchert, K.S.Wilson, G.J.Davies, H.J.Gilbert, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 95.35 / 1.78
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 111.970, 111.970, 47.400, 90.00, 90.00, 120.00
R / Rfree (%) 11.9 / 17.3

Sodium Binding Sites:

The binding sites of Sodium atom in the Understanding How Diverse Mannanases Recognise Heterogeneous Substrates (pdb code 2whj). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Understanding How Diverse Mannanases Recognise Heterogeneous Substrates, PDB code: 2whj:

Sodium binding site 1 out of 1 in 2whj

Go back to Sodium Binding Sites List in 2whj
Sodium binding site 1 out of 1 in the Understanding How Diverse Mannanases Recognise Heterogeneous Substrates


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Understanding How Diverse Mannanases Recognise Heterogeneous Substrates within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1318

b:25.9
occ:1.00
O A:HOH2373 2.7 23.8 1.0
O A:HOH2370 2.7 14.9 1.0
O A:HOH2371 3.2 17.5 0.5
O A:PRO309 4.0 14.2 1.0
CA A:THR310 4.4 16.7 1.0
OXT A:THR310 4.7 20.9 1.0
C A:THR310 5.0 19.2 1.0
C A:PRO309 5.0 14.4 1.0

Reference:

L.E.Tailford, V.M.A.Ducros, J.E.Flint, S.M.Roberts, C.Morland, D.L.Zechel, N.Smith, M.E.Bjornvad, T.V.Borchert, K.S.Wilson, G.J.Davies, H.J.Gilbert. Understanding How Diverse -Mannanases Recognise Heterogeneous Substrates. Biochemistry V. 48 7009 2009.
ISSN: ISSN 0006-2960
PubMed: 19441796
DOI: 10.1021/BI900515D
Page generated: Tue Dec 15 05:57:38 2020

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