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Sodium in PDB 2wf9: Structure of Beta-Phosphoglucomutase Inhibited with Glucose- 6-Phosphate, and Beryllium Trifluoride, Crystal Form 2

Enzymatic activity of Structure of Beta-Phosphoglucomutase Inhibited with Glucose- 6-Phosphate, and Beryllium Trifluoride, Crystal Form 2

All present enzymatic activity of Structure of Beta-Phosphoglucomutase Inhibited with Glucose- 6-Phosphate, and Beryllium Trifluoride, Crystal Form 2:
5.4.2.6;

Protein crystallography data

The structure of Structure of Beta-Phosphoglucomutase Inhibited with Glucose- 6-Phosphate, and Beryllium Trifluoride, Crystal Form 2, PDB code: 2wf9 was solved by M.W.Bowler, N.J.Baxter, C.E.Webster, S.Pollard, T.Alizadeh, A.M.Hounslow, M.J.Cliff, W.Bermel, N.H.Williams, F.Hollfelder, G.M.Blackburn, J.P.Waltho, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.40
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 32.100, 72.700, 85.200, 90.00, 90.00, 90.00
R / Rfree (%) 18.4 / 20

Other elements in 2wf9:

The structure of Structure of Beta-Phosphoglucomutase Inhibited with Glucose- 6-Phosphate, and Beryllium Trifluoride, Crystal Form 2 also contains other interesting chemical elements:

Fluorine (F) 3 atoms
Magnesium (Mg) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of Beta-Phosphoglucomutase Inhibited with Glucose- 6-Phosphate, and Beryllium Trifluoride, Crystal Form 2 (pdb code 2wf9). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Beta-Phosphoglucomutase Inhibited with Glucose- 6-Phosphate, and Beryllium Trifluoride, Crystal Form 2, PDB code: 2wf9:

Sodium binding site 1 out of 1 in 2wf9

Go back to Sodium Binding Sites List in 2wf9
Sodium binding site 1 out of 1 in the Structure of Beta-Phosphoglucomutase Inhibited with Glucose- 6-Phosphate, and Beryllium Trifluoride, Crystal Form 2


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Beta-Phosphoglucomutase Inhibited with Glucose- 6-Phosphate, and Beryllium Trifluoride, Crystal Form 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1226

b:17.0
occ:0.70
 O A:HOH2116 2.2 20.4 1.0
O A:HOH2110 2.3 28.4 1.0
O A:HOH2107 2.4 25.5 1.0
O A:HOH2114 2.6 31.4 1.0
OD1 A:ASP91 4.2 12.1 1.0
O A:HOH2108 4.3 32.0 1.0
O A:ASP86 4.3 11.0 1.0
OD2 A:ASP91 4.3 11.7 1.0
O A:HOH2029 4.4 34.7 1.0
OG A:SER88 4.5 11.2 1.0
CG A:ASP91 4.7 10.0 1.0
OD1 A:ASP86 4.8 16.9 1.0

Reference:

J.L.Griffin, M.W.Bowler, N.J.Baxter, K.N.Leigh, H.R.Dannatt, A.M.Hounslow, G.M.Blackburn, C.E.Webster, M.J.Cliff, J.P.Waltho. Near Attack Conformers Dominate Beta-Phosphoglucomutase Complexes Where Geometry and Charge Distribution Reflect Those of Substrate. Proc.Natl.Acad.Sci.Usa V. 109 6910 2012.
ISSN: ISSN 0027-8424
PubMed: 22505741
DOI: 10.1073/PNAS.1116855109
Page generated: Tue Dec 15 05:57:24 2020

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