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Sodium in PDB 2wdr: E. Coli Succinate:Quinone Oxidoreductase (Sqr) with Pentachlorophenol Bound
Enzymatic activity of E. Coli Succinate:Quinone Oxidoreductase (Sqr) with Pentachlorophenol Bound
All present enzymatic activity of E. Coli Succinate:Quinone Oxidoreductase (Sqr) with Pentachlorophenol Bound:
1.3.5.1; 1.3.99.1;
1.3.5.1; 1.3.99.1;
Protein crystallography data
The structure of E. Coli Succinate:Quinone Oxidoreductase (Sqr) with Pentachlorophenol Bound, PDB code: 2wdr
was solved by
J.Ruprecht,
V.Yankovskaya,
E.Maklashina,
S.Iwata,
G.Cecchini,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 46.52 / 3.20 |
| Space group | P 21 21 21 |
| Cell size a, b, c (Å), α, β, γ (°) | 119.955, 186.128, 204.034, 90.00, 90.00, 90.00 |
| R / Rfree (%) | 19.7 / 22.8 |
Other elements in 2wdr:
The structure of E. Coli Succinate:Quinone Oxidoreductase (Sqr) with Pentachlorophenol Bound also contains other interesting chemical elements:
| Iron | (Fe) | 30 atoms |
| Chlorine | (Cl) | 15 atoms |
Sodium Binding Sites:
The binding sites of Sodium atom in the E. Coli Succinate:Quinone Oxidoreductase (Sqr) with Pentachlorophenol Bound
(pdb code 2wdr). This binding sites where shown within
5.0 Angstroms radius around Sodium atom.
In total 3 binding sites of Sodium where determined in the E. Coli Succinate:Quinone Oxidoreductase (Sqr) with Pentachlorophenol Bound, PDB code: 2wdr:
Jump to Sodium binding site number: 1; 2; 3;
In total 3 binding sites of Sodium where determined in the E. Coli Succinate:Quinone Oxidoreductase (Sqr) with Pentachlorophenol Bound, PDB code: 2wdr:
Jump to Sodium binding site number: 1; 2; 3;
Sodium binding site 1 out of 3 in 2wdr
Go back to
Sodium Binding Sites List in 2wdr
Sodium binding site 1 out
of 3 in the E. Coli Succinate:Quinone Oxidoreductase (Sqr) with Pentachlorophenol Bound
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 1 of E. Coli Succinate:Quinone Oxidoreductase (Sqr) with Pentachlorophenol Bound within 5.0Å range:
|
Sodium binding site 2 out of 3 in 2wdr
Go back to
Sodium Binding Sites List in 2wdr
Sodium binding site 2 out
of 3 in the E. Coli Succinate:Quinone Oxidoreductase (Sqr) with Pentachlorophenol Bound
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 2 of E. Coli Succinate:Quinone Oxidoreductase (Sqr) with Pentachlorophenol Bound within 5.0Å range:
|
Sodium binding site 3 out of 3 in 2wdr
Go back to
Sodium Binding Sites List in 2wdr
Sodium binding site 3 out
of 3 in the E. Coli Succinate:Quinone Oxidoreductase (Sqr) with Pentachlorophenol Bound
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 3 of E. Coli Succinate:Quinone Oxidoreductase (Sqr) with Pentachlorophenol Bound within 5.0Å range:
|
Reference:
J.Ruprecht,
V.Yankovskaya,
E.Maklashina,
S.Iwata,
G.Cecchini.
Structure of Escherichia Coli Succinate:Quinone Oxidoreductase with An Occupied and Empty Quinone- Binding Site. J.Biol.Chem. V. 284 29836 2009.
ISSN: ISSN 0021-9258
PubMed: 19710024
DOI: 10.1074/JBC.M109.010058
Page generated: Mon Oct 7 04:37:32 2024
ISSN: ISSN 0021-9258
PubMed: 19710024
DOI: 10.1074/JBC.M109.010058
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