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Sodium in PDB 2w4m: The Crystal Structure of Human N-Acetylneuraminic Acid Phosphatase, Nanp

Enzymatic activity of The Crystal Structure of Human N-Acetylneuraminic Acid Phosphatase, Nanp

All present enzymatic activity of The Crystal Structure of Human N-Acetylneuraminic Acid Phosphatase, Nanp:
3.1.3.29;

Protein crystallography data

The structure of The Crystal Structure of Human N-Acetylneuraminic Acid Phosphatase, Nanp, PDB code: 2w4m was solved by E.Ugochukwu, R.Cocking, W.W.Yue, A.C.W.Pike, A.Roos, J.R.C.Muniz, F.Vondelft, C.Bountra, C.H.Arrowsmith, J.Weigelt, A.Edwards, U.Oppermann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.42 / 2.60
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 122.740, 122.740, 74.550, 90.00, 90.00, 120.00
R / Rfree (%) 18.2 / 21.2

Other elements in 2w4m:

The structure of The Crystal Structure of Human N-Acetylneuraminic Acid Phosphatase, Nanp also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the The Crystal Structure of Human N-Acetylneuraminic Acid Phosphatase, Nanp (pdb code 2w4m). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the The Crystal Structure of Human N-Acetylneuraminic Acid Phosphatase, Nanp, PDB code: 2w4m:

Sodium binding site 1 out of 1 in 2w4m

Go back to Sodium Binding Sites List in 2w4m
Sodium binding site 1 out of 1 in the The Crystal Structure of Human N-Acetylneuraminic Acid Phosphatase, Nanp


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Crystal Structure of Human N-Acetylneuraminic Acid Phosphatase, Nanp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1245

b:38.1
occ:1.00
 O A:ASP14 2.3 28.2 1.0
O A:HOH2075 2.3 24.6 1.0
OD1 A:ASP189 2.4 33.2 1.0
OD2 A:ASP12 2.5 32.1 1.0
O3 A:PO41249 2.5 45.6 1.0
CL A:CL1246 2.9 51.0 1.0
O A:HOH2088 3.2 42.5 1.0
CG A:ASP12 3.4 35.6 1.0
C A:ASP14 3.4 28.5 1.0
CG A:ASP189 3.5 26.1 1.0
OD1 A:ASP12 3.6 33.1 1.0
OG1 A:THR190 3.8 28.0 1.0
P A:PO41249 3.8 37.5 1.0
OD2 A:ASP189 3.9 32.6 1.0
O4 A:PO41249 3.9 43.8 1.0
CB A:ASP14 3.9 32.8 1.0
CA A:ASP14 4.0 31.6 1.0
N A:ASP14 4.2 32.5 1.0
O A:HOH2087 4.3 27.6 1.0
ND2 A:ASN15 4.4 29.9 1.0
OD2 A:ASP194 4.5 27.7 1.0
O1 A:PO41249 4.5 38.0 1.0
OG1 A:THR16 4.5 25.4 1.0
N A:ASN15 4.5 26.3 1.0
CB A:ASN15 4.7 24.3 1.0
CB A:ASP189 4.8 24.4 1.0
CB A:ASP12 4.8 39.4 1.0
O2 A:PO41249 4.9 28.2 1.0
CB A:THR190 4.9 22.6 1.0
C A:ASN15 4.9 30.8 1.0
CA A:ASN15 4.9 28.1 1.0
C A:LEU13 5.0 31.0 1.0
N A:ASP189 5.0 28.2 1.0

Reference:

E.Ugochukwu, R.Cocking, W.W.Yue, A.C.W.Pike, A.Roos, J.R.C.Muniz, F.Von Delft, C.Bountra, C.H.Arrowsmith, J.Weigelt, A.Edwards, U.Oppermann. The Crystal Structure of Human N-Acetylneuraminic Acid Phosphatase, Nanp To Be Published.
Page generated: Sun Aug 17 11:52:18 2025

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