Sodium in PDB 2vx5: Cellvibrio Japonicus Mannanase CJMAN26C Mannose-Bound Form

The structure of Cellvibrio Japonicus Mannanase CJMAN26C Mannose-Bound Form, PDB code: 2vx5 was solved by A.Cartmell, E.Topakas, V.M.-A.Ducros, M.D.L.Suits, G.J.Davies, H.J.Gilbert, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.74 / 1.47
Space group	P 61 2 2
Cell size a, b, c (Å), α, β, γ (°)	84.712, 84.712, 244.687, 90.00, 90.00, 120.00
R / Rfree (%)	15.044 / 16.871

The binding sites of Sodium atom in the Cellvibrio Japonicus Mannanase CJMAN26C Mannose-Bound Form (pdb code 2vx5). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Cellvibrio Japonicus Mannanase CJMAN26C Mannose-Bound Form, PDB code: 2vx5:

Sodium binding site 1 out of 1 in the Cellvibrio Japonicus Mannanase CJMAN26C Mannose-Bound Form


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Cellvibrio Japonicus Mannanase CJMAN26C Mannose-Bound Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1421 b:6.5 occ:1.00 O A:VAL408 2.2 10.1 1.0 O A:HOH2402 2.4 16.8 1.0 O A:TYR403 2.4 9.0 1.0 O A:SER405 2.4 10.9 1.0 O A:HOH2397 2.5 14.9 1.0 OE2 A:GLU413 2.5 17.1 1.0 OE1 A:GLU413 2.7 16.9 1.0 CD A:GLU413 2.9 16.7 1.0 C A:VAL408 3.5 9.1 1.0 C A:SER405 3.6 11.0 1.0 C A:TYR403 3.6 9.1 1.0 C A:GLN404 4.0 9.8 1.0 N A:SER405 4.2 9.9 1.0 O A:GLN404 4.2 10.8 1.0 O A:HOH2406 4.3 19.0 1.0 CA A:VAL408 4.3 9.7 1.0 N A:VAL408 4.4 9.9 1.0 CG A:GLU413 4.4 15.6 1.0 N A:LEU409 4.4 8.6 1.0 N A:GLU406 4.4 11.7 1.0 CA A:GLN404 4.4 9.6 1.0 CA A:GLU406 4.4 12.8 1.0 O A:GLU406 4.4 12.8 1.0 N A:GLN404 4.5 9.4 1.0 CA A:LEU409 4.5 8.5 1.0 CA A:SER405 4.5 11.1 1.0 C A:GLU406 4.5 12.2 1.0 CB A:VAL408 4.6 9.5 1.0 CA A:TYR403 4.6 9.1 1.0 O A:PHE402 4.8 9.2 1.0 CD1 A:TYR403 4.8 11.3 1.0 CD2 A:LEU409 5.0 12.1 1.0 CB A:GLU413 5.0 14.2 1.0

A.Cartmell, E.Topakas, V.M.-A.Ducros, M.D.L.Suits, G.J.Davies, H.J.Gilbert. The Cellvibrio Japonicus Mannanase CJMAN26C Displays A Unique Exo-Mode of Action That Is Conferred By Subtle Changes to the Distal Region of the Active Site. J.Biol.Chem. V. 283 34403 2008.
ISSN: ISSN 0021-9258
PubMed: 18799462
DOI: 10.1074/JBC.M804053200