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Sodium in PDB 2vwk: Uracil Recognition in Archaeal Dna Polymerases Captured By X-Ray Crystallography. V93Q Polymerase Variant

Enzymatic activity of Uracil Recognition in Archaeal Dna Polymerases Captured By X-Ray Crystallography. V93Q Polymerase Variant

All present enzymatic activity of Uracil Recognition in Archaeal Dna Polymerases Captured By X-Ray Crystallography. V93Q Polymerase Variant:
2.7.7.7;

Protein crystallography data

The structure of Uracil Recognition in Archaeal Dna Polymerases Captured By X-Ray Crystallography. V93Q Polymerase Variant, PDB code: 2vwk was solved by S.J.Firbank, J.Wardle, P.Heslop, R.J.Lewis, B.A.Connolly, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 51.00 / 2.6
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 58.432, 104.747, 154.408, 90.00, 90.00, 90.00
R / Rfree (%) 21.7 / 27.5

Sodium Binding Sites:

The binding sites of Sodium atom in the Uracil Recognition in Archaeal Dna Polymerases Captured By X-Ray Crystallography. V93Q Polymerase Variant (pdb code 2vwk). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Uracil Recognition in Archaeal Dna Polymerases Captured By X-Ray Crystallography. V93Q Polymerase Variant, PDB code: 2vwk:

Sodium binding site 1 out of 1 in 2vwk

Go back to Sodium Binding Sites List in 2vwk
Sodium binding site 1 out of 1 in the Uracil Recognition in Archaeal Dna Polymerases Captured By X-Ray Crystallography. V93Q Polymerase Variant


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Uracil Recognition in Archaeal Dna Polymerases Captured By X-Ray Crystallography. V93Q Polymerase Variant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1774

b:36.8
occ:1.00
 O2 A:SO41776 2.2 60.6 1.0
NZ A:LYS487 3.1 23.2 1.0
NH2 A:ARG460 3.3 17.9 1.0
S A:SO41776 3.7 61.0 1.0
CE A:LYS487 3.9 23.2 1.0
NH1 A:ARG460 3.9 19.6 1.0
CZ A:ARG460 4.1 19.8 1.0
O4 A:SO41776 4.3 60.6 1.0
O3 A:SO41776 4.4 60.6 1.0
CD A:LYS487 4.5 21.1 1.0
O1 A:SO41776 4.5 59.4 1.0
NZ A:LYS464 4.7 30.8 1.0

Reference:

S.J.Firbank, J.Wardle, P.Heslop, R.J.Lewis, B.A.Connolly. Uracil Recognition in Archaeal Dna Polymerases Captured By X-Ray Crystallography. J.Mol.Biol. V. 381 529 2008.
ISSN: ISSN 0022-2836
PubMed: 18614176
DOI: 10.1016/J.JMB.2008.06.004
Page generated: Tue Dec 15 05:56:52 2020

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