Sodium in PDB 2vv8: Co-Bound Structure of Bjfixlh

All present enzymatic activity of Co-Bound Structure of Bjfixlh:
2.7.13.3;

The structure of Co-Bound Structure of Bjfixlh, PDB code: 2vv8 was solved by R.A.Ayers, K.Moffat, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.88 / 1.61
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	48.923, 50.296, 58.993, 73.37, 70.26, 72.13
R / Rfree (%)	20.6 / 24.9

The structure of Co-Bound Structure of Bjfixlh also contains other interesting chemical elements:

Iron	(Fe)	4 atoms
Chlorine	(Cl)	2 atoms

The binding sites of Sodium atom in the Co-Bound Structure of Bjfixlh (pdb code 2vv8). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Co-Bound Structure of Bjfixlh, PDB code: 2vv8:

Sodium binding site 1 out of 1 in the Co-Bound Structure of Bjfixlh


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Co-Bound Structure of Bjfixlh within 5.0Å range: probe atom residue distance (Å) B Occ C:Na1261 b:9.7 occ:1.00 O C:LEU181 2.3 11.8 1.0 O C:ILE184 2.3 13.2 1.0 O C:HOH2029 3.1 12.3 1.0 O C:GLU182 3.3 13.4 1.0 C C:ILE184 3.5 13.0 1.0 C C:LEU181 3.5 11.6 1.0 C C:GLU182 3.7 12.5 1.0 CA C:GLU182 3.9 11.8 1.0 N C:ILE184 4.2 12.9 1.0 N C:GLU182 4.2 11.7 1.0 CA C:ILE184 4.2 12.4 1.0 N C:GLY185 4.5 13.1 1.0 CB C:ILE184 4.5 12.8 1.0 CA C:GLY185 4.6 13.4 1.0 CA C:LEU181 4.6 11.5 1.0 C C:ALA183 4.6 12.6 1.0 N C:ALA183 4.6 12.8 1.0 CG2 C:ILE184 4.8 13.3 1.0 O C:ALA183 5.0 13.5 1.0

R.A.Ayers, K.Moffat. Changes in Quaternary Structure in the Signaling Mechanisms of Pas Domains. Biochemistry V. 47 12078 2008.
ISSN: ISSN 0006-2960
PubMed: 18942854
DOI: 10.1021/BI801254C