Sodium in the structure of Crystal Structure Of A Phosphonate Monoester Hydrolase From Rhizobium Leguminosarum: A New Member of the Alkaline Phosphatase Superfamily (pdb 2vqr)

The binding sites of Sodium atom in the structure of Crystal Structure Of A Phosphonate Monoester Hydrolase From Rhizobium Leguminosarum: A New Member of the Alkaline Phosphatase Superfamily (pdb code 2vqr). This binding sites where shown with 5.0 Angstroms radius around Sodium atom. The 2vqr structure was solved by S.JONAS, M.HYVONEN, F.HOLLFELDER, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 44.6-1.4 Space group I222 a (A) 59.700 b (A) 96.600 c (A) 178.500 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 15.6 Rfree (%) 18.2 Sodium Binding Sites: Sodium binding site 1 out of 1 in 2vqr Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 2vqr. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Asn469, A: Hoh2151, A: Hoh2270, A: Hoh2271, A: Hoh2365, A: Hoh2369, A: Hoh2583, A: Hoh2585, A: Hoh2588, A: Hoh2589, A: Hoh2594, A: Hoh2595, A: Hoh2596, conact list: Atom Atom Distance (A) Na O A:Asn469 4.17 Na CB A:Asn469 4.80 Na O A:Hoh2151 2.42 Na O A:Hoh2270 4.27 Na O A:Hoh2271 2.42 Na O A:Hoh2365 4.43 Na O A:Hoh2369 4.17 Na O A:Hoh2583 3.88 Na O A:Hoh2585 4.43 Na O A:Hoh2588 2.20 Na O A:Hoh2589 4.60 Na O A:Hoh2594 4.49 Na O A:Hoh2595 4.58 Na O A:Hoh2596 2.35 interactive model: