Sodium in the structure of Formyl-Coa Transferase With Aspartyl-Formyl Anhydide Intermediate (pdb 2vjm)

The binding sites of Sodium atom in the structure of Formyl-Coa Transferase With Aspartyl-Formyl Anhydide Intermediate (pdb code 2vjm). This binding sites where shown with 5.0 Angstroms radius around Sodium atom. The 2vjm structure was solved by C.L.BERTHOLD, C.G.TOYOTA, N.G.J.RICHARDS, Y.LINDQVIST, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 30.0-1.9 Space group I4 a (A) 151.668 b (A) 151.668 c (A) 98.947 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 17.1 Rfree (%) 20.3 Sodium Binding Sites: Sodium binding site 1 out of 1 in 2vjm Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 2vjm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Asp294, A: Met295, A: Asp297, A: Tyr343, A: Hoh2287, conact list: Atom Atom Distance (A) Na O A:Asp294 2.42 Na CB A:Asp294 4.56 Na C A:Asp294 3.45 Na CA A:Asp294 4.13 Na O A:Met295 4.56 Na N A:Met295 4.45 Na C A:Met295 4.68 Na CA A:Met295 4.68 Na N A:Asp297 4.44 Na CB A:Asp297 4.64 Na CB A:Asp297 4.61 Na OD2 A:Asp297 4.29 Na OD1 A:Asp297 2.52 Na OD1 A:Asp297 4.60 Na CG A:Asp297 3.64 Na CG A:Asp297 4.83 Na CA A:Asp297 4.45 Na CA A:Asp297 4.44 Na OH A:Tyr343 4.35 Na O A:Hoh2287 2.41 interactive model: