Sodium in PDB 2qa0: Structure of Adeno-Associated Virus Serotype 8

The structure of Structure of Adeno-Associated Virus Serotype 8, PDB code: 2qa0 was solved by H.-J.Nam, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.00 / 2.60
Space group	P 63 2 2
Cell size a, b, c (Å), α, β, γ (°)	254.840, 254.840, 445.430, 90.00, 90.00, 120.00
R / Rfree (%)	25.5 / 25.9

The binding sites of Sodium atom in the Structure of Adeno-Associated Virus Serotype 8 (pdb code 2qa0). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Adeno-Associated Virus Serotype 8, PDB code: 2qa0:

Sodium binding site 1 out of 1 in the Structure of Adeno-Associated Virus Serotype 8


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Adeno-Associated Virus Serotype 8 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1 b:24.5 occ:1.00 OH A:TYR703 3.0 32.9 1.0 O A:HOH826 3.1 43.0 1.0 CB A:ASP714 3.6 35.5 1.0 CA A:SER705 3.7 39.2 1.0 NH1 A:ARG727 3.8 41.3 1.0 CD1 A:PHE715 3.9 23.4 1.0 CB A:SER705 3.9 39.1 1.0 CZ A:TYR703 3.9 31.3 1.0 OG A:SER705 4.0 41.5 1.0 CE1 A:PHE715 4.0 23.2 1.0 CE2 A:TYR703 4.0 30.9 1.0 OD1 A:ASP714 4.1 37.1 1.0 CG A:ASP714 4.4 36.3 1.0 N A:SER705 4.5 36.8 1.0 O A:ASP714 4.6 34.6 1.0 O A:THR704 4.6 36.6 1.0 N A:ASN706 4.7 42.5 1.0 C A:SER705 4.8 40.5 1.0 CA A:ASP714 4.9 33.6 1.0 C A:THR704 4.9 35.5 1.0 O A:HOH822 4.9 39.1 1.0 C A:ASP714 4.9 33.4 1.0 CZ A:ARG727 5.0 40.4 1.0

H.J.Nam, M.D.Lane, E.Padron, B.Gurda, R.Mckenna, E.Kohlbrenner, G.Aslanidi, B.Byrne, N.Muzyczka, S.Zolotukhin, M.Agbandje-Mckenna. Structure of Adeno-Associated Virus Serotype 8, A Gene Therapy Vector. J.Virol. V. 81 12260 2007.
ISSN: ISSN 0022-538X
PubMed: 17728238
DOI: 10.1128/JVI.01304-07