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Sodium in PDB 2q6e: Crystal Structure of Glucuronate Isomerase From Bacillus Halodurans Complexed with Zn

Protein crystallography data

The structure of Crystal Structure of Glucuronate Isomerase From Bacillus Halodurans Complexed with Zn, PDB code: 2q6e was solved by A.A.Fedorov, E.V.Fedorov, Y.Patskovsky, R.Toro, J.M.Sauder, S.K.Burley, F.M.Rauschel, S.C.Almo, New York Sgx Research Center For Structuralgenomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.99 / 2.40
Space group P 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 133.372, 133.372, 196.821, 90.00, 90.00, 90.00
R / Rfree (%) 23.1 / 24.6

Other elements in 2q6e:

The structure of Crystal Structure of Glucuronate Isomerase From Bacillus Halodurans Complexed with Zn also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Zinc (Zn) 3 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Glucuronate Isomerase From Bacillus Halodurans Complexed with Zn (pdb code 2q6e). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Glucuronate Isomerase From Bacillus Halodurans Complexed with Zn, PDB code: 2q6e:

Sodium binding site 1 out of 1 in 2q6e

Go back to Sodium Binding Sites List in 2q6e
Sodium binding site 1 out of 1 in the Crystal Structure of Glucuronate Isomerase From Bacillus Halodurans Complexed with Zn


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Glucuronate Isomerase From Bacillus Halodurans Complexed with Zn within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Na504

b:33.4
occ:1.00
O B:HOH602 2.0 25.9 1.0
O A:HOH553 2.1 24.8 1.0
O C:HOH544 2.1 25.6 1.0
O B:HOH601 2.1 24.3 1.0
O A:HOH554 2.2 22.2 1.0
O C:HOH545 2.3 34.4 1.0
OE2 A:GLU332 3.7 34.0 1.0
OE2 C:GLU332 3.8 31.4 1.0
OE2 B:GLU332 3.9 32.5 1.0
O B:HOH529 4.3 27.4 1.0
OE2 C:GLU336 4.5 36.9 1.0
OE2 A:GLU336 4.5 31.3 1.0
OE2 B:GLU336 4.5 33.7 1.0
CD A:GLU332 4.8 35.7 1.0
CD C:GLU332 4.9 31.0 1.0
CB C:GLU336 4.9 32.1 1.0

Reference:

A.A.Fedorov, E.V.Fedorov, Y.Patskovsky, R.Toro, J.M.Sauder, S.K.Burley, F.M.Raushel, S.C.Almo. Crystal Structure of Glucuronate Isomerase From Bacillus Halodurans Complexed with Zn. To Be Published.
Page generated: Tue Dec 15 05:54:24 2020

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