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Sodium in PDB 2plo: D-(Gtatacc) Low Temperature (100K)

Protein crystallography data

The structure of D-(Gtatacc) Low Temperature (100K), PDB code: 2plo was solved by T.Prange, M.Lecouvey, E.Migianu-Griffoni, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.40
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 44.783, 44.783, 41.393, 90.00, 90.00, 120.00
R / Rfree (%) 17.7 / n/a

Sodium Binding Sites:

The binding sites of Sodium atom in the D-(Gtatacc) Low Temperature (100K) (pdb code 2plo). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the D-(Gtatacc) Low Temperature (100K), PDB code: 2plo:

Sodium binding site 1 out of 1 in 2plo

Go back to Sodium Binding Sites List in 2plo
Sodium binding site 1 out of 1 in the D-(Gtatacc) Low Temperature (100K)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of D-(Gtatacc) Low Temperature (100K) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na20

b:30.6
occ:1.00
OP2 A:DG2 2.0 18.6 1.0
O A:HOH25 2.1 43.5 1.0
O A:HOH21 2.1 20.9 1.0
O A:HOH22 2.1 28.4 1.0
O A:HOH23 2.1 36.5 1.0
O A:HOH24 2.1 28.8 1.0
P A:DG2 3.4 18.1 1.0
O A:HOH49 4.0 29.7 1.0
O3' A:DG1 4.2 17.5 1.0
O A:HOH30 4.2 22.4 1.0
O5' A:DG2 4.3 15.5 1.0
OP1 A:DG2 4.3 21.2 1.0
C3' A:DG1 4.4 16.4 1.0
C5' A:DG1 4.7 20.0 1.0

Reference:

T.Prange, E.Girard, R.Kahn, M.Lecouvey, E.Migianu-Griffoni, M.Mezouar, R.Fourme. Adaptation of Macromolecular Crystals to Extreme Conditions: High Pressure Versus Low Temperature To Be Published.
Page generated: Tue Dec 15 05:54:00 2020

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