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Sodium in PDB 2pjp: Structure of the Mrna-Binding Domain of Elongation Factor Selb From E.Coli in Complex with Secis Rna

Protein crystallography data

The structure of Structure of the Mrna-Binding Domain of Elongation Factor Selb From E.Coli in Complex with Secis Rna, PDB code: 2pjp was solved by N.Soler, D.Fourmy, S.Yoshizawa, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 51.50 / 2.30
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 103.498, 56.515, 48.414, 90.00, 95.60, 90.00
R / Rfree (%) 20 / 25.1

Other elements in 2pjp:

The structure of Structure of the Mrna-Binding Domain of Elongation Factor Selb From E.Coli in Complex with Secis Rna also contains other interesting chemical elements:

Magnesium (Mg) 17 atoms
Chlorine (Cl) 2 atoms
Calcium (Ca) 4 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of the Mrna-Binding Domain of Elongation Factor Selb From E.Coli in Complex with Secis Rna (pdb code 2pjp). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of the Mrna-Binding Domain of Elongation Factor Selb From E.Coli in Complex with Secis Rna, PDB code: 2pjp:

Sodium binding site 1 out of 1 in 2pjp

Go back to Sodium Binding Sites List in 2pjp
Sodium binding site 1 out of 1 in the Structure of the Mrna-Binding Domain of Elongation Factor Selb From E.Coli in Complex with Secis Rna


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of the Mrna-Binding Domain of Elongation Factor Selb From E.Coli in Complex with Secis Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na159

b:49.9
occ:1.00
O A:HOH44 3.9 12.6 1.0
CE A:MET556 4.5 21.6 1.0
CB A:GLU552 4.9 29.6 1.0
O A:HOH30 4.9 28.1 1.0

Reference:

N.Soler, D.Fourmy, S.Yoshizawa. Structural Insight Into A Molecular Switch in Tandem Winged-Helix Motifs From Elongation Factor Selb. J.Mol.Biol. V. 370 728 2007.
ISSN: ISSN 0022-2836
PubMed: 17537456
DOI: 10.1016/J.JMB.2007.05.001
Page generated: Tue Dec 15 05:53:58 2020

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