Sodium in the structure of Crystal Structure of Pfl From E.Coli (pdb 2pfl)

The binding sites of Sodium atom in the structure of Crystal Structure of Pfl From E.Coli (pdb code 2pfl). This binding sites where shown with 5.0 Angstroms radius around Sodium atom. The 2pfl structure was solved by A.BECKER, K.FRITZ-WOLF, W.KABSCH, J.KNAPPE, S.SCHULTZ, A.F.V.WAGNER, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 15.0-2.9 Space group P43212 a (A) 159.020 b (A) 159.020 c (A) 160.640 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 20.2 Rfree (%) 24.2 Sodium Binding Sites: Sodium binding site 1 out of 2 in 2pfl Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 2pfl. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Val651, A: Ala652, A: Lys653, A: Leu654, A: Pro655, A: Phe656, A: Ile663, A: Glu700, A: Gly701, A: Gly702, A: Gln703, A: Hoh2110, A: Hoh2279, conact list: Atom Atom Distance (A) Na O A:Val651 4.76 Na O A:Ala652 2.74 Na C A:Ala652 3.76 Na CA A:Ala652 4.34 Na O A:Lys653 4.99 Na N A:Lys653 4.81 Na C A:Lys653 4.62 Na O A:Leu654 2.43 Na N A:Leu654 4.37 Na C A:Leu654 3.58 Na CA A:Leu654 4.53 Na N A:Pro655 4.41 Na C A:Pro655 4.64 Na CA A:Pro655 4.46 Na N A:Phe656 3.92 Na CB A:Phe656 4.36 Na CA A:Phe656 4.74 Na CD1 A:Ile663 4.87 Na OE1 A:Glu700 2.42 Na CB A:Glu700 4.17 Na OE2 A:Glu700 4.55 Na CD A:Glu700 3.47 Na C A:Glu700 4.71 Na CG A:Glu700 3.90 Na O A:Gly701 2.49 Na N A:Gly701 4.11 Na C A:Gly701 3.48 Na CA A:Gly701 4.34 Na N A:Gly702 4.31 Na C A:Gly702 4.83 Na CA A:Gly702 4.38 Na N A:Gln703 4.95 Na O A:Hoh2110 4.25 Na O A:Hoh2279 2.79 interactive model: Sodium binding site 2 out of 2 in 2pfl Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Sodium in the PDB 2pfl. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: Val651, B: Ala652, B: Lys653, B: Leu654, B: Pro655, B: Phe656, B: Ile663, B: Glu700, B: Gly701, B: Gly702, B: Gln703, conact list: Atom Atom Distance (A) Na O B:Val651 4.76 Na O B:Ala652 2.83 Na C B:Ala652 3.83 Na CA B:Ala652 4.34 Na N B:Lys653 4.90 Na C B:Lys653 4.81 Na O B:Leu654 2.58 Na N B:Leu654 4.54 Na C B:Leu654 3.76 Na CA B:Leu654 4.70 Na N B:Pro655 4.60 Na C B:Pro655 4.77 Na CA B:Pro655 4.64 Na N B:Phe656 4.02 Na CB B:Phe656 4.30 Na CA B:Phe656 4.76 Na CD1 B:Ile663 4.87 Na OE1 B:Glu700 2.52 Na CB B:Glu700 4.25 Na OE2 B:Glu700 4.62 Na CD B:Glu700 3.54 Na C B:Glu700 4.67 Na CG B:Glu700 3.93 Na O B:Gly701 2.31 Na N B:Gly701 4.05 Na C B:Gly701 3.33 Na CA B:Gly701 4.24 Na N B:Gly702 4.15 Na C B:Gly702 4.62 Na CA B:Gly702 4.21 Na N B:Gln703 4.72 interactive model: