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Sodium in PDB 2p67: Crystal Structure of Lao/Ao Transport System Kinase

Protein crystallography data

The structure of Crystal Structure of Lao/Ao Transport System Kinase, PDB code: 2p67 was solved by U.A.Ramagopal, J.Adams, L.Rodgers, R.Toro, K.Bain, M.Rutter, K.Schwinn, J.M.Sauder, S.K.Burley, S.C.Almo, New York Sgx Research Center Forstructural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.19 / 1.80
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 56.311, 108.452, 141.296, 90.00, 90.00, 90.00
R / Rfree (%) 20.7 / 23

Other elements in 2p67:

The structure of Crystal Structure of Lao/Ao Transport System Kinase also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Lao/Ao Transport System Kinase (pdb code 2p67). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Lao/Ao Transport System Kinase, PDB code: 2p67:

Sodium binding site 1 out of 1 in 2p67

Go back to Sodium Binding Sites List in 2p67
Sodium binding site 1 out of 1 in the Crystal Structure of Lao/Ao Transport System Kinase


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Lao/Ao Transport System Kinase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na401

b:35.1
occ:1.00
OG A:SER274 2.6 32.6 1.0
O A:HOH422 2.6 23.2 1.0
O A:HOH560 2.7 39.3 1.0
O A:HOH548 2.7 33.5 1.0
O A:ARG270 2.7 26.5 1.0
O A:HOH428 2.9 23.8 1.0
C A:ARG270 3.6 26.8 1.0
CB A:SER274 3.7 28.4 1.0
CA A:ARG270 3.9 26.1 1.0
CB A:ARG270 4.0 25.9 1.0
N A:SER274 4.1 26.6 1.0
CA A:SER274 4.4 27.6 1.0
CB A:GLN273 4.4 24.9 1.0
OE1 A:GLN273 4.5 25.1 1.0
O A:HOH561 4.6 43.3 1.0
O A:HOH458 4.6 27.6 1.0
N A:GLN271 4.7 28.3 1.0
CG A:ARG270 4.8 25.4 1.0
O A:HOH413 4.8 19.2 1.0
C A:GLN273 4.9 25.7 1.0
O A:HOH462 4.9 28.3 1.0

Reference:

U.A.Ramagopal, J.Adams, L.Rodgers, R.Toro, K.Bain, M.Rutter, K.Schwinn, J.M.Sauder, S.K.Burley, S.C.Almo. Crystal Structure of Lao/Ao Transport System Kinase To Be Published.
Page generated: Tue Dec 15 05:53:37 2020

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