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Sodium in PDB 2p2t: Crystal Structure of Dynein Light Chain LC8 Bound to Residues 123-138 of Intermediate Chain IC74

Protein crystallography data

The structure of Crystal Structure of Dynein Light Chain LC8 Bound to Residues 123-138 of Intermediate Chain IC74, PDB code: 2p2t was solved by G.Benison, P.A.Karplus, E.Barbar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 22.18 / 3.00
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 44.356, 44.356, 204.466, 90.00, 90.00, 120.00
R / Rfree (%) 21 / 29.6

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Dynein Light Chain LC8 Bound to Residues 123-138 of Intermediate Chain IC74 (pdb code 2p2t). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Dynein Light Chain LC8 Bound to Residues 123-138 of Intermediate Chain IC74, PDB code: 2p2t:

Sodium binding site 1 out of 1 in 2p2t

Go back to Sodium Binding Sites List in 2p2t
Sodium binding site 1 out of 1 in the Crystal Structure of Dynein Light Chain LC8 Bound to Residues 123-138 of Intermediate Chain IC74


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Dynein Light Chain LC8 Bound to Residues 123-138 of Intermediate Chain IC74 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na101

b:51.1
occ:1.00
OE1 A:GLU45 2.8 47.1 1.0
CA A:GLU45 3.1 40.6 1.0
CB A:GLU45 3.2 41.4 1.0
NZ A:LYS48 3.5 57.2 1.0
CD A:GLU45 3.6 46.5 1.0
CG A:GLU45 3.6 44.3 1.0
N A:GLU45 3.7 37.7 1.0
CE A:LYS48 3.7 56.9 1.0
CD A:LYS48 4.1 57.6 1.0
C A:LYS44 4.3 37.1 1.0
O A:HOH117 4.4 52.5 1.0
C A:GLU45 4.4 41.5 1.0
O A:LYS44 4.4 38.8 1.0
O A:GLU45 4.6 43.5 1.0
CB A:LYS48 4.7 54.1 1.0
O A:TYR41 4.7 28.1 1.0
OE2 A:GLU45 4.8 47.6 1.0

Reference:

G.Benison, P.A.Karplus, E.Barbar. Structure and Dynamics of LC8 Complexes with Kxtqt-Motif Peptides: Swallow and Dynein Intermediate Chain Compete For A Common Site. J.Mol.Biol. V. 371 457 2007.
ISSN: ISSN 0022-2836
PubMed: 17570393
DOI: 10.1016/J.JMB.2007.05.046
Page generated: Tue Dec 15 05:53:34 2020

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