Atomistry » Sodium » PDB 2mat-2oj0 » 2o0r
Atomistry »
  Sodium »
    PDB 2mat-2oj0 »
      2o0r »

Sodium in PDB 2o0r: The Three-Dimensional Structure of N-Succinyldiaminopimelate Aminotransferase From Mycobacterium Tuberculosis

Protein crystallography data

The structure of The Three-Dimensional Structure of N-Succinyldiaminopimelate Aminotransferase From Mycobacterium Tuberculosis, PDB code: 2o0r was solved by S.Weyand, G.Kefala, M.S.Weiss, Tb Structural Genomics Consortium (Tbsgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.00
Space group P 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 54.340, 56.130, 247.470, 90.00, 90.00, 90.00
R / Rfree (%) 16.4 / 21.3

Other elements in 2o0r:

The structure of The Three-Dimensional Structure of N-Succinyldiaminopimelate Aminotransferase From Mycobacterium Tuberculosis also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the The Three-Dimensional Structure of N-Succinyldiaminopimelate Aminotransferase From Mycobacterium Tuberculosis (pdb code 2o0r). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the The Three-Dimensional Structure of N-Succinyldiaminopimelate Aminotransferase From Mycobacterium Tuberculosis, PDB code: 2o0r:

Sodium binding site 1 out of 1 in 2o0r

Go back to Sodium Binding Sites List in 2o0r
Sodium binding site 1 out of 1 in the The Three-Dimensional Structure of N-Succinyldiaminopimelate Aminotransferase From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Three-Dimensional Structure of N-Succinyldiaminopimelate Aminotransferase From Mycobacterium Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na603

b:32.9
occ:1.00
O B:HOH931 2.1 18.9 1.0
O B:HOH932 2.3 25.6 1.0
O B:HOH930 2.4 15.6 1.0
O B:HOH929 2.5 28.2 1.0
O B:ALA191 2.7 14.9 1.0
C B:ALA191 3.7 13.9 1.0
O B:HOH889 4.2 30.4 1.0
CA B:ALA191 4.2 13.2 1.0
O B:THR160 4.2 15.9 1.0
CB B:ALA191 4.3 12.6 1.0
O B:PRO158 4.4 19.9 1.0
O B:THR157 4.6 15.9 1.0
O B:HOH850 4.6 20.3 1.0
CA B:PRO158 4.6 16.6 1.0
O B:ASN192 4.7 14.8 1.0
CD2 B:LEU193 4.8 8.1 1.0
N B:ASN192 4.8 14.0 1.0
C B:PRO158 4.9 18.5 1.0
CB B:ASN192 4.9 13.9 1.0

Reference:

S.Weyand, G.Kefala, M.S.Weiss. The Three-Dimensional Structure of N-Succinyldiaminopimelate Aminotransferase From Mycobacterium Tuberculosis J.Mol.Biol. V. 367 825 2007.
ISSN: ISSN 0022-2836
PubMed: 17292400
DOI: 10.1016/J.JMB.2007.01.023
Page generated: Tue Dec 15 05:52:12 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy