Sodium in PDB 2o0r: The Three-Dimensional Structure of N-Succinyldiaminopimelate Aminotransferase From Mycobacterium Tuberculosis

The structure of The Three-Dimensional Structure of N-Succinyldiaminopimelate Aminotransferase From Mycobacterium Tuberculosis, PDB code: 2o0r was solved by S.Weyand, G.Kefala, M.S.Weiss, Tb Structural Genomics Consortium (Tbsgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.00
Space group	P 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	54.340, 56.130, 247.470, 90.00, 90.00, 90.00
R / Rfree (%)	16.4 / 21.3

The structure of The Three-Dimensional Structure of N-Succinyldiaminopimelate Aminotransferase From Mycobacterium Tuberculosis also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

The binding sites of Sodium atom in the The Three-Dimensional Structure of N-Succinyldiaminopimelate Aminotransferase From Mycobacterium Tuberculosis (pdb code 2o0r). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the The Three-Dimensional Structure of N-Succinyldiaminopimelate Aminotransferase From Mycobacterium Tuberculosis, PDB code: 2o0r:

Sodium binding site 1 out of 1 in the The Three-Dimensional Structure of N-Succinyldiaminopimelate Aminotransferase From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Three-Dimensional Structure of N-Succinyldiaminopimelate Aminotransferase From Mycobacterium Tuberculosis within 5.0Å range: probe atom residue distance (Å) B Occ B:Na603 b:32.9 occ:1.00 O B:HOH931 2.1 18.9 1.0 O B:HOH932 2.3 25.6 1.0 O B:HOH930 2.4 15.6 1.0 O B:HOH929 2.5 28.2 1.0 O B:ALA191 2.7 14.9 1.0 C B:ALA191 3.7 13.9 1.0 O B:HOH889 4.2 30.4 1.0 CA B:ALA191 4.2 13.2 1.0 O B:THR160 4.2 15.9 1.0 CB B:ALA191 4.3 12.6 1.0 O B:PRO158 4.4 19.9 1.0 O B:THR157 4.6 15.9 1.0 O B:HOH850 4.6 20.3 1.0 CA B:PRO158 4.6 16.6 1.0 O B:ASN192 4.7 14.8 1.0 CD2 B:LEU193 4.8 8.1 1.0 N B:ASN192 4.8 14.0 1.0 C B:PRO158 4.9 18.5 1.0 CB B:ASN192 4.9 13.9 1.0

S.Weyand, G.Kefala, M.S.Weiss. The Three-Dimensional Structure of N-Succinyldiaminopimelate Aminotransferase From Mycobacterium Tuberculosis J.Mol.Biol. V. 367 825 2007.
ISSN: ISSN 0022-2836
PubMed: 17292400
DOI: 10.1016/J.JMB.2007.01.023