Atomistry » Sodium » PDB 2mat-2oj0 » 2nz2
Atomistry »
  Sodium »
    PDB 2mat-2oj0 »
      2nz2 »

Sodium in PDB 2nz2: Crystal Structure of Human Argininosuccinate Synthase in Complex with Aspartate and Citrulline

Enzymatic activity of Crystal Structure of Human Argininosuccinate Synthase in Complex with Aspartate and Citrulline

All present enzymatic activity of Crystal Structure of Human Argininosuccinate Synthase in Complex with Aspartate and Citrulline:
6.3.4.5;

Protein crystallography data

The structure of Crystal Structure of Human Argininosuccinate Synthase in Complex with Aspartate and Citrulline, PDB code: 2nz2 was solved by T.Karlberg, J.Uppenberg, C.Arrowsmith, H.Berglund, R.D.Busam, R.Collins, A.Edwards, U.B.Ericsson, S.Flodin, A.Flores, S.Graslund, B.M.Hallberg, M.Hammarstrom, M.Hogbom, I.Johansson, T.Kotenyova, A.Magnusdottir, M.Moche, M.E.Nilsson, P.Nordlund, T.Nyman, D.Ogg, C.Persson, J.Sagemark, P.Stenmark, M.Sundstrom, A.G.Thorsell, S.Van Den Berg, K.Wallden, J.Weigelt, L.Holmberg-Schiavone, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.41 / 2.40
Space group F 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 95.940, 117.470, 155.150, 90.00, 90.00, 90.00
R / Rfree (%) 19.4 / 26.5

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Human Argininosuccinate Synthase in Complex with Aspartate and Citrulline (pdb code 2nz2). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Human Argininosuccinate Synthase in Complex with Aspartate and Citrulline, PDB code: 2nz2:

Sodium binding site 1 out of 1 in 2nz2

Go back to Sodium Binding Sites List in 2nz2
Sodium binding site 1 out of 1 in the Crystal Structure of Human Argininosuccinate Synthase in Complex with Aspartate and Citrulline


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Human Argininosuccinate Synthase in Complex with Aspartate and Citrulline within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na503

b:13.1
occ:1.00
NE2 A:GLN107 3.4 18.1 1.0
O A:HOH551 3.4 15.8 1.0
O A:HOH598 3.4 24.0 1.0
CG2 A:ILE139 3.8 15.3 1.0
CB A:ALA136 4.0 13.2 1.0
CG A:GLN107 4.0 18.6 1.0
N A:ILE139 4.1 16.0 1.0
CD A:GLN107 4.2 17.7 1.0
C A:GLN138 4.4 17.1 1.0
CA A:ILE139 4.5 15.8 1.0
CB A:GLN138 4.5 19.0 1.0
CB A:ILE139 4.6 15.5 1.0
O A:HOH519 4.7 14.0 1.0
OE1 A:GLN138 4.8 31.9 1.0
CA A:GLN138 4.8 18.3 1.0
O A:GLN138 5.0 16.8 1.0
N A:GLN138 5.0 17.5 1.0

Reference:

T.Karlberg, R.Collins, S.Van Den Berg, A.Flores, M.Hammarstrom, M.Hogbom, L.Holmberg Schiavone, J.Uppenberg. Structure of Human Argininosuccinate Synthetase. Acta Crystallogr.,Sect.D V. 64 279 2008.
ISSN: ISSN 0907-4449
PubMed: 18323623
DOI: 10.1107/S0907444907067455
Page generated: Tue Dec 15 05:52:09 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy