Sodium in PDB 2nql: Crystal Structure of A Member of the Enolase Superfamily From Agrobacterium Tumefaciens

The structure of Crystal Structure of A Member of the Enolase Superfamily From Agrobacterium Tumefaciens, PDB code: 2nql was solved by Y.Patskovsky, U.Ramagopal, R.Toro, J.M.Sauder, M.Dickey, J.M.Adams, S.Ozyurt, S.R.Wasserman, J.Gerlt, S.K.Burley, S.C.Almo, New York Sgxresearch Center For Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.80
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	102.071, 102.071, 369.202, 90.00, 90.00, 120.00
R / Rfree (%)	16.9 / 20.1

The binding sites of Sodium atom in the Crystal Structure of A Member of the Enolase Superfamily From Agrobacterium Tumefaciens (pdb code 2nql). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of A Member of the Enolase Superfamily From Agrobacterium Tumefaciens, PDB code: 2nql:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of A Member of the Enolase Superfamily From Agrobacterium Tumefaciens


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Member of the Enolase Superfamily From Agrobacterium Tumefaciens within 5.0Å range: probe atom residue distance (Å) B Occ A:Na401 b:49.1 occ:1.00 OE1 A:GLU266 2.2 35.0 1.0 OE2 A:GLU240 2.3 35.1 1.0 O A:HOH1360 2.4 32.8 1.0 O A:HOH1224 2.9 22.7 1.0 CD A:GLU240 3.1 31.3 1.0 CD2 A:HIS315 3.2 29.7 1.0 CD A:GLU266 3.3 35.5 1.0 OE1 A:GLU240 3.5 28.7 1.0 CB A:GLU266 3.6 22.7 1.0 OE1 A:GLN287 3.7 26.2 1.0 CG A:GLU266 3.8 22.4 1.0 NZ A:LYS184 3.9 25.7 1.0 CD A:GLN287 3.9 26.1 1.0 O A:HOH1398 4.0 37.6 1.0 NE2 A:GLN287 4.0 23.7 1.0 CG A:HIS315 4.1 20.0 1.0 O A:HOH1478 4.1 45.0 1.0 NE2 A:HIS315 4.1 25.5 1.0 CG A:GLU240 4.1 18.6 1.0 OE2 A:GLU266 4.3 30.6 1.0 CB A:GLN287 4.3 21.1 1.0 CB A:HIS315 4.4 18.0 1.0 OE1 A:GLU341 4.6 22.6 1.0 CG A:GLN287 4.7 23.4 1.0 O A:HOH1241 4.7 24.7 1.0 CA A:GLU266 4.8 19.8 1.0 O A:GLN287 5.0 20.9 1.0 N A:GLU266 5.0 18.9 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of A Member of the Enolase Superfamily From Agrobacterium Tumefaciens


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of A Member of the Enolase Superfamily From Agrobacterium Tumefaciens within 5.0Å range: probe atom residue distance (Å) B Occ B:Na402 b:42.5 occ:1.00 OE2 B:GLU341 2.3 31.9 1.0 OE2 B:GLU240 2.9 30.5 1.0 NE2 B:GLN287 3.3 22.2 1.0 CD B:GLN287 3.3 22.1 1.0 OE1 B:GLU266 3.4 30.9 1.0 NZ B:LYS184 3.4 26.4 1.0 O B:HOH1239 3.4 23.0 1.0 OE1 B:GLU240 3.5 27.7 1.0 CD B:GLU341 3.5 31.4 1.0 CD B:GLU240 3.5 30.0 1.0 OE1 B:GLN287 3.5 23.3 1.0 CD2 B:HIS315 3.5 25.4 1.0 O B:HOH1217 3.6 20.0 1.0 CB B:GLN287 3.7 16.4 1.0 O B:HOH1483 3.8 37.2 1.0 O B:HOH1531 3.9 38.6 1.0 CG B:GLN287 4.0 17.0 1.0 OE1 B:GLU341 4.0 21.1 1.0 CB B:HIS315 4.1 16.2 1.0 CG B:HIS315 4.2 17.6 1.0 CB B:GLU266 4.3 16.9 1.0 CD B:GLU266 4.4 32.1 1.0 CA B:HIS315 4.5 17.0 1.0 OH B:TYR156 4.6 22.6 1.0 CG B:GLU341 4.6 17.2 1.0 NE2 B:HIS315 4.7 21.0 1.0 CG B:GLU240 4.7 17.9 1.0 O B:GLN287 4.8 19.7 1.0 CE B:LYS184 4.8 20.6 1.0 CG B:GLU266 4.8 16.8 1.0 N B:HIS315 5.0 16.8 1.0

Y.Patskovsky, U.Ramagopal, R.Toro, J.M.Sauder, M.Dickey, J.M.Adams, S.Ozyurt, S.R.Wasserman, J.Gerlt, S.K.Burley, S.C.Almo. Crystal Structure of Enolase From Agrobacterium Tumefaciens C58 To Be Published.