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Sodium in PDB 2mco: Structural Studies on Dinuclear Ruthenium(II) Complexes That Bind Diastereoselectively to An Anti-Parallel Folded Human Telomere Sequence

Other elements in 2mco:

The structure of Structural Studies on Dinuclear Ruthenium(II) Complexes That Bind Diastereoselectively to An Anti-Parallel Folded Human Telomere Sequence also contains other interesting chemical elements:

Ruthenium (Ru) 10 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Structural Studies on Dinuclear Ruthenium(II) Complexes That Bind Diastereoselectively to An Anti-Parallel Folded Human Telomere Sequence (pdb code 2mco). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Structural Studies on Dinuclear Ruthenium(II) Complexes That Bind Diastereoselectively to An Anti-Parallel Folded Human Telomere Sequence, PDB code: 2mco:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 2mco

Go back to Sodium Binding Sites List in 2mco
Sodium binding site 1 out of 2 in the Structural Studies on Dinuclear Ruthenium(II) Complexes That Bind Diastereoselectively to An Anti-Parallel Folded Human Telomere Sequence


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structural Studies on Dinuclear Ruthenium(II) Complexes That Bind Diastereoselectively to An Anti-Parallel Folded Human Telomere Sequence within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na102

b:0.0
occ:1.00
O6 A:DG3 2.3 0.0 1.0
O6 A:DG8 2.3 0.0 1.0
O6 A:DG20 2.4 0.0 1.0
O6 A:DG15 2.4 0.0 1.0
O6 A:DG16 2.5 0.0 1.0
O6 A:DG4 2.6 0.0 1.0
O6 A:DG9 2.7 0.0 1.0
H1 A:DG4 3.3 0.0 1.0
C6 A:DG8 3.3 0.0 1.0
C6 A:DG3 3.3 0.0 1.0
H1 A:DG9 3.3 0.0 1.0
H1 A:DG16 3.3 0.0 1.0
H1 A:DG8 3.4 0.0 1.0
C6 A:DG20 3.4 0.0 1.0
C6 A:DG16 3.5 0.0 1.0
C6 A:DG15 3.5 0.0 1.0
H1 A:DG20 3.5 0.0 1.0
C6 A:DG4 3.5 0.0 1.0
C6 A:DG9 3.6 0.0 1.0
N1 A:DG8 3.8 0.0 1.0
N1 A:DG16 3.8 0.0 1.0
N1 A:DG9 3.8 0.0 1.0
N1 A:DG4 3.8 0.0 1.0
H1 A:DG3 3.9 0.0 1.0
N1 A:DG20 3.9 0.0 1.0
O6 A:DG21 4.0 0.0 1.0
N1 A:DG3 4.1 0.0 1.0
NA A:NA103 4.1 0.0 1.0
H1 A:DG15 4.2 0.0 1.0
N1 A:DG15 4.3 0.0 1.0
C5 A:DG15 4.4 0.0 1.0
C5 A:DG3 4.4 0.0 1.0
O2 A:DT6 4.5 0.0 1.0
C5 A:DG8 4.5 0.0 1.0
N7 A:DG15 4.6 0.0 1.0
C5 A:DG20 4.7 0.0 1.0
C6 A:DG21 4.7 0.0 1.0
H1 A:DG21 4.7 0.0 1.0
N7 A:DG3 4.7 0.0 1.0
C2 A:DT6 4.7 0.0 1.0
C5 A:DG16 4.8 0.0 1.0
O6 A:DG2 4.8 0.0 1.0
C5 A:DG4 4.8 0.0 1.0
C5 A:DG9 4.9 0.0 1.0
H3 A:DT6 4.9 0.0 1.0
N3 A:DT6 4.9 0.0 1.0
O6 A:DG10 5.0 0.0 1.0

Sodium binding site 2 out of 2 in 2mco

Go back to Sodium Binding Sites List in 2mco
Sodium binding site 2 out of 2 in the Structural Studies on Dinuclear Ruthenium(II) Complexes That Bind Diastereoselectively to An Anti-Parallel Folded Human Telomere Sequence


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Structural Studies on Dinuclear Ruthenium(II) Complexes That Bind Diastereoselectively to An Anti-Parallel Folded Human Telomere Sequence within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na103

b:0.0
occ:1.00
O6 A:DG10 2.3 0.0 1.0
O6 A:DG14 2.3 0.0 1.0
O6 A:DG2 2.3 0.0 1.0
O6 A:DG21 2.6 0.0 1.0
O6 A:DG15 2.6 0.0 1.0
O6 A:DG22 2.6 0.0 1.0
O6 A:DG9 2.8 0.0 1.0
C6 A:DG15 3.2 0.0 1.0
H1 A:DG14 3.2 0.0 1.0
H1 A:DG10 3.3 0.0 1.0
H1 A:DG2 3.3 0.0 1.0
C6 A:DG2 3.4 0.0 1.0
C6 A:DG14 3.4 0.0 1.0
C6 A:DG10 3.4 0.0 1.0
H1 A:DG15 3.5 0.0 1.0
C6 A:DG9 3.5 0.0 1.0
C6 A:DG22 3.5 0.0 1.0
O6 A:DG3 3.6 0.0 1.0
H1 A:DG22 3.6 0.0 1.0
N1 A:DG15 3.6 0.0 1.0
C6 A:DG21 3.8 0.0 1.0
N1 A:DG14 3.8 0.0 1.0
N1 A:DG2 3.8 0.0 1.0
N1 A:DG10 3.8 0.0 1.0
H1 A:DG9 3.8 0.0 1.0
N1 A:DG22 3.9 0.0 1.0
H1 A:DG21 4.0 0.0 1.0
N1 A:DG9 4.1 0.0 1.0
C5 A:DG15 4.1 0.0 1.0
NA A:NA102 4.1 0.0 1.0
N1 A:DG21 4.4 0.0 1.0
H3 A:2FJ101 4.4 0.0 1.0
C5 A:DG9 4.5 0.0 1.0
C6 A:DG3 4.5 0.0 1.0
N7 A:DG15 4.6 0.0 1.0
H1 A:DG3 4.7 0.0 1.0
C2 A:DG15 4.7 0.0 1.0
C5 A:DG22 4.7 0.0 1.0
C5 A:DG14 4.7 0.0 1.0
C5 A:DG10 4.7 0.0 1.0
C5 A:DG2 4.7 0.0 1.0
C3 A:2FJ101 4.8 0.0 1.0
H25 A:2FJ101 4.9 0.0 1.0
C5 A:DG21 4.9 0.0 1.0
C2 A:DG22 4.9 0.0 1.0
N1 A:DG3 5.0 0.0 1.0

Reference:

T.Wilson, P.J.Costa, V.Felix, M.P.Williamson, J.A.Thomas. Structural Studies on Dinuclear Ruthenium(II) Complexes That Bind Diastereoselectively to An Antiparallel Folded Human Telomere Sequence. J.Med.Chem. V. 56 8674 2013.
ISSN: ISSN 0022-2623
PubMed: 24088028
DOI: 10.1021/JM401119B
Page generated: Tue Dec 15 05:51:57 2020

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