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Sodium in PDB 2jln: Structure of MHP1, A Nucleobase-Cation-Symport-1 Family Transporter

Protein crystallography data

The structure of Structure of MHP1, A Nucleobase-Cation-Symport-1 Family Transporter, PDB code: 2jln was solved by S.Weyand, T.Shimamura, S.Yajima, S.Suzuki, O.Mirza, K.Krusong, E.P.Carpenter, N.G.Rutherford, J.M.Hadden, J.O'reilly, P.Ma, M.Saidijam, S.G.Patching, R.J.Hope, H.T.Norbertczak, P.C.J.Roach, S.Iwata, P.J.F.Henderson, A.D.Cameron, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.014 / 2.85
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 79.700, 109.140, 113.820, 90.00, 90.00, 90.00
R / Rfree (%) 23.38 / 28.09

Other elements in 2jln:

The structure of Structure of MHP1, A Nucleobase-Cation-Symport-1 Family Transporter also contains other interesting chemical elements:

Mercury (Hg) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of MHP1, A Nucleobase-Cation-Symport-1 Family Transporter (pdb code 2jln). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of MHP1, A Nucleobase-Cation-Symport-1 Family Transporter, PDB code: 2jln:

Sodium binding site 1 out of 1 in 2jln

Go back to Sodium Binding Sites List in 2jln
Sodium binding site 1 out of 1 in the Structure of MHP1, A Nucleobase-Cation-Symport-1 Family Transporter


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of MHP1, A Nucleobase-Cation-Symport-1 Family Transporter within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1471

b:60.3
occ:1.00
O A:ALA309 2.1 55.9 1.0
OG A:SER312 2.5 54.1 1.0
O A:ALA38 2.6 56.9 1.0
O A:ILE41 2.7 50.9 1.0
OG1 A:THR313 2.8 52.5 1.0
C A:ALA309 3.0 54.9 1.0
CB A:SER312 3.2 51.9 1.0
CA A:ALA309 3.4 57.2 1.0
N A:THR313 3.6 55.9 1.0
C A:SER312 3.6 59.3 1.0
CB A:THR313 3.7 51.8 1.0
CA A:SER312 3.8 56.6 1.0
C A:ILE41 3.8 52.6 1.0
C A:ALA38 3.8 56.5 1.0
N A:SER312 4.0 62.0 1.0
O A:SER312 4.1 61.3 1.0
CB A:ALA309 4.1 57.4 1.0
N A:THR310 4.2 55.9 1.0
CA A:THR313 4.2 53.9 1.0
CB A:GLN42 4.3 47.6 1.0
O A:LEU308 4.4 62.5 1.0
CA A:MET39 4.5 53.5 1.0
CB A:ILE41 4.5 51.2 1.0
CA A:ILE41 4.5 51.2 1.0
N A:MET39 4.6 56.5 1.0
N A:ILE41 4.6 51.5 1.0
O A:MET39 4.6 48.2 1.0
C A:MET39 4.6 50.3 1.0
CA A:THR310 4.6 55.7 1.0
N A:ALA309 4.7 57.6 1.0
C A:THR310 4.8 57.2 1.0
N A:GLN42 4.8 55.4 1.0
CA A:ALA38 4.8 54.7 1.0
CA A:GLN42 4.8 51.0 1.0
CD1 A:LEU175 4.9 58.2 1.0
CG2 A:THR313 5.0 47.9 1.0
O A:THR310 5.0 55.4 1.0

Reference:

S.Weyand, T.Shimamura, S.Yajima, S.Suzuki, O.Mirza, K.Krusong, E.P.Carpenter, N.G.Rutherford, J.M.Hadden, J.O'reilly, P.Ma, M.Saidijam, S.G.Patching, R.J.Hope, H.T.Norbertczak, P.C.J.Roach, S.Iwata, P.J.F.Henderson, A.D.Cameron. Structure and Molecular Mechanism of A Nucleobase- Cation-Symport-1 Family Transporter. Science V. 322 709 2008.
ISSN: ISSN 0036-8075
PubMed: 18927357
DOI: 10.1126/SCIENCE.1164440
Page generated: Tue Dec 15 05:51:53 2020

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