Sodium in the structure of Structure of A Putative Acetyltransferase (ACIAD1637) From Acinetobacter Baylyi ADP1 (pdb 2jlm)

The binding sites of Sodium atom in the structure of Structure of A Putative Acetyltransferase (ACIAD1637) From Acinetobacter Baylyi ADP1 (pdb code 2jlm). This binding sites where shown with 5.0 Angstroms radius around Sodium atom. The 2jlm structure was solved by A.M.DAVIES, R.TATA, A.SNAPE, B.J.SUTTON, P.R.BROWN, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 68.0-2.4 Space group P32 a (A) 78.410 b (A) 78.410 c (A) 197.760 alpha (°) 90.00 beta (°) 90.00 gamma (°) 120.00 Rfactor (%) 18.2 Rfree (%) 23.8 Sodium Binding Sites: Sodium binding site 1 out of 2 in 2jlm Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 2jlm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: C: Tyr39, C: Glu93, C: Cys130, D: Arg83, D: Phe85, D: Tyr88, C: Act1183, C: Hoh2010, C: Hoh2012, C: Hoh2013, conact list: Atom Atom Distance (A) Na CB C:Tyr39 4.47 Na CE2 C:Tyr39 4.24 Na CD1 C:Tyr39 4.38 Na CD2 C:Tyr39 3.94 Na CZ C:Tyr39 4.59 Na CE1 C:Tyr39 4.66 Na CG C:Tyr39 4.01 Na OE2 C:Glu93 5.00 Na CB C:Cys130 4.61 Na SG C:Cys130 3.91 Na CZ D:Arg83 4.09 Na NE D:Arg83 4.04 Na NH2 D:Arg83 3.22 Na CD1 D:Phe85 4.69 Na CE1 D:Phe85 4.88 Na CG D:Phe85 4.99 Na CD1 D:Tyr88 4.85 Na CZ D:Tyr88 3.74 Na CE1 D:Tyr88 3.57 Na OH D:Tyr88 3.02 Na O C:Act1183 3.22 Na CH3 C:Act1183 3.96 Na C C:Act1183 3.97 Na O C:Hoh2010 4.62 Na O C:Hoh2012 3.08 Na O C:Hoh2013 4.01 interactive model: Sodium binding site 2 out of 2 in 2jlm Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Sodium in the PDB 2jlm. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: E: Ala37, E: Tyr39, E: Cys130, F: Arg83, F: Tyr88, E: Act1183, E: Hoh2018, E: Hoh2020, E: Hoh2021, conact list: Atom Atom Distance (A) Na O E:Ala37 5.00 Na CB E:Tyr39 4.49 Na CE2 E:Tyr39 4.04 Na CD1 E:Tyr39 4.26 Na CD2 E:Tyr39 3.81 Na CZ E:Tyr39 4.36 Na CE1 E:Tyr39 4.46 Na CG E:Tyr39 3.92 Na O E:Cys130 4.21 Na O E:Cys130 4.15 Na CB E:Cys130 4.26 Na CB E:Cys130 4.25 Na SG E:Cys130 3.76 Na C E:Cys130 4.82 Na C E:Cys130 4.80 Na CZ F:Arg83 4.45 Na NE F:Arg83 4.47 Na NH2 F:Arg83 3.54 Na CZ F:Tyr88 4.12 Na CE1 F:Tyr88 4.06 Na OH F:Tyr88 3.26 Na CH3 E:Act1183 4.21 Na C E:Act1183 4.68 Na O E:Hoh2018 3.93 Na O E:Hoh2020 3.30 Na O E:Hoh2021 3.46 interactive model: