Sodium in PDB 2jja: Crystal Structure of Gna with Synthetic Copper Base Pair

The structure of Crystal Structure of Gna with Synthetic Copper Base Pair, PDB code: 2jja was solved by M.K.Schlegel, L.-O.Essen, E.Meggers, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	10.00 / 1.3
Space group	I 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	18.160, 48.590, 59.870, 90.00, 90.00, 90.00
R / Rfree (%)	12.4 / 14.8

The structure of Crystal Structure of Gna with Synthetic Copper Base Pair also contains other interesting chemical elements:

Cobalt	(Co)	2 atoms
Magnesium	(Mg)	2 atoms
Copper	(Cu)	1 atom

The binding sites of Sodium atom in the Crystal Structure of Gna with Synthetic Copper Base Pair (pdb code 2jja). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Gna with Synthetic Copper Base Pair, PDB code: 2jja:

Sodium binding site 1 out of 1 in the Crystal Structure of Gna with Synthetic Copper Base Pair


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Gna with Synthetic Copper Base Pair within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1006 b:78.2 occ:1.00 O A:HOH2029 2.0 33.9 1.0 O A:HOH2037 2.1 42.9 1.0 O A:HOH2008 2.3 23.5 0.5 O A:HOH2041 2.6 46.5 1.0 C3G A:ZHP3 3.8 18.7 1.0 O2G A:ZHP3 4.0 16.7 1.0 C1G A:ZHP3 4.0 16.6 1.0 C2G A:ZHP3 4.2 16.9 1.0 O A:HOH2045 4.2 20.2 0.5 O3G A:ZHP3 4.3 19.4 1.0 N7 A:ZGU2 4.4 14.8 1.0 O1P A:ZHP3 4.6 28.8 1.0 C6 A:ZHP3 4.8 16.8 1.0 C8 A:ZGU2 4.9 14.6 1.0 N1 A:ZHP3 5.0 15.9 1.0

M.K.Schlegel, L.-O.Essen, E.Meggers. Duplex Structure of A Minimal Nucleic Acid. J.Am.Chem.Soc. V. 130 8158 2008.
ISSN: ISSN 0002-7863
PubMed: 18529005
DOI: 10.1021/JA802788G