Sodium in PDB 2jin: Crystal Structure of Pdz Domain of Synaptojanin-2 Binding Protein

The structure of Crystal Structure of Pdz Domain of Synaptojanin-2 Binding Protein, PDB code: 2jin was solved by J.Tickle, C.Phillips, A.C.W.Pike, C.Cooper, E.Salah, J.Elkins, A.P.Turnbull, A.Edwards, C.H.Arrowsmith, J.Weigelt, M.Sundstrom, D.Doyle, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.68 / 1.5
Space group	I 4
Cell size a, b, c (Å), α, β, γ (°)	65.993, 65.993, 41.384, 90.00, 90.00, 90.00
R / Rfree (%)	16.6 / 22

The binding sites of Sodium atom in the Crystal Structure of Pdz Domain of Synaptojanin-2 Binding Protein (pdb code 2jin). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Pdz Domain of Synaptojanin-2 Binding Protein, PDB code: 2jin:

Sodium binding site 1 out of 1 in the Crystal Structure of Pdz Domain of Synaptojanin-2 Binding Protein


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Pdz Domain of Synaptojanin-2 Binding Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1103 b:16.2 occ:1.00 O A:LYS48 2.7 15.2 1.0 O A:GLY24 2.7 17.2 1.0 N A:ALA54 2.9 14.2 1.0 C A:GLY51 3.1 19.5 1.0 CA A:GLY51 3.2 14.2 1.0 CB A:ALA54 3.3 15.7 1.0 O A:GLY51 3.3 17.3 1.0 N A:GLY51 3.3 13.9 1.0 N A:ALA53 3.4 16.3 1.0 C A:GLY24 3.5 17.6 1.0 N A:ALA52 3.6 17.2 1.0 CA A:GLY24 3.6 15.7 1.0 N A:LYS48 3.6 16.6 1.0 CA A:ALA54 3.7 17.1 1.0 C A:LYS48 3.7 15.5 1.0 C A:ALA53 3.8 16.3 1.0 CA A:ALA53 3.8 16.7 1.0 CB A:ALA53 3.9 18.3 1.0 CG2 A:ILE47 3.9 17.4 1.0 CA A:LYS48 3.9 16.2 1.0 CB A:LYS48 3.9 16.8 1.0 C A:ALA52 4.1 19.6 1.0 O A:LEU23 4.4 18.6 1.0 CA A:ALA52 4.4 18.8 1.0 C A:ILE47 4.5 18.1 1.0 C A:ASN50 4.6 14.3 1.0 O A:HOH2009 4.6 16.4 1.0 N A:GLY24 4.8 14.9 1.0 N A:PHE25 4.8 14.0 1.0 N A:GLU49 4.9 14.2 1.0 C A:ALA54 4.9 17.0 1.0 CA A:ILE47 4.9 16.1 1.0 CG A:LYS48 4.9 21.6 1.0 O A:ALA52 4.9 19.3 1.0 O A:ALA53 5.0 17.2 1.0 N A:LEU55 5.0 16.4 1.0

J.Tickle, C.Phillips, A.C.W.Pike, C.Cooper, E.Salah, J.Elkins, A.P.Turnbull, A.Edwards, C.H.Arrowsmith, J.Weigelt, M.Sundstrom, D.Doyle. Crystal Structure of Pdz Domain of Synaptojanin-2 Binding Protein To Be Published.