Chemical elements
  Sodium
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      2j40
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      2j6k
      2j6l
      2j80
      2j9e
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      2jba
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      2jc4
      2jca
      2jgp
      2jh0
      2jh5
      2jh6
      2jhj
      2jhn
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    PDB 8icx-9icy

Sodium in the structure of Crystal Structure of the Streptomyces Coelicolor Holo- [Acyl-Carrier-Protein] Synthase (Acps) At 2 A. (pdb 2jca)






The binding sites of Sodium atom in the structure of Crystal Structure of the Streptomyces Coelicolor Holo- [Acyl-Carrier-Protein] Synthase (Acps) At 2 A. (pdb code 2jca). This binding sites where shown with 5.0 Angstroms radius around Sodium atom.
The 2jca structure was solved by P.DALL'AGLIO, C.ARTHUR, M.P.CRUMP, J.CROSBY, A.T.HADFIELD, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)65.8-2.0
Space groupP3121
a (A)75.940
b (A)75.940
c (A)108.351
alpha (°)90.00
beta (°)90.00
gamma (°)120.00
Rfactor (%)17.8
Rfree (%)22


Sodium Binding Sites:

Sodium binding site 1 out of 1 in 2jca


Sodium binding site 1 out of 1 in 2jca
Click to enlarge
stereopicture of Sodium binding site 1 out of 1 in 2jca
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 2jca. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Glu33, A: Ser34,

conact list:


AtomAtomDistance (A)
NaO A:Glu334.73
NaN A:Glu334.32
NaOE1 A:Glu332.65
NaCB A:Glu333.51
NaOE2 A:Glu334.81
NaCD A:Glu333.63
NaC A:Glu333.82
NaCG A:Glu333.87
NaCA A:Glu334.08
NaN A:Ser343.17
NaCB A:Ser343.65
NaOG A:Ser344.37
NaCA A:Ser343.70

interactive model:




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