Sodium in PDB 2jby: A Viral Protein Unexpectedly Mimics the Structure and Function of Pro- Survival Bcl-2

The structure of A Viral Protein Unexpectedly Mimics the Structure and Function of Pro- Survival Bcl-2, PDB code: 2jby was solved by M.Kvansakul, M.F.Van Delft, E.F.Lee, J.M.Gulbis, W.D.Fairlie, D.C.S.Huang, P.M.Colman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.41
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	69.187, 69.187, 120.601, 90.00, 90.00, 90.00
R / Rfree (%)	28.7 / 29.2

The binding sites of Sodium atom in the A Viral Protein Unexpectedly Mimics the Structure and Function of Pro- Survival Bcl-2 (pdb code 2jby). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the A Viral Protein Unexpectedly Mimics the Structure and Function of Pro- Survival Bcl-2, PDB code: 2jby:

Sodium binding site 1 out of 1 in the A Viral Protein Unexpectedly Mimics the Structure and Function of Pro- Survival Bcl-2


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of A Viral Protein Unexpectedly Mimics the Structure and Function of Pro- Survival Bcl-2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1129 b:46.6 occ:1.00 O A:HOH2033 3.2 97.2 1.0 N A:ALA103 3.3 67.3 1.0 OD2 A:ASP101 3.4 71.0 1.0 CB A:ALA103 3.6 68.7 1.0 N A:ALA102 3.6 63.6 1.0 O A:HOH2006 3.8 91.9 1.0 CB A:ASP101 3.9 67.0 1.0 CG A:ASP101 4.0 69.2 1.0 CA A:ALA103 4.0 67.5 1.0 CB A:ALA102 4.0 62.0 1.0 CA A:ALA102 4.1 63.9 1.0 C A:ALA102 4.1 66.0 1.0 ND2 A:ASN14 4.1 75.3 1.0 CD1 A:TYR10 4.2 61.3 1.0 CE1 A:TYR10 4.3 60.7 1.0 C A:ASP101 4.4 65.5 1.0 CA A:ASP101 4.8 66.0 1.0

M.Kvansakul, M.F.Van Delft, E.F.Lee, J.M.Gulbis, W.D.Fairlie, D.C.Huang, P.M.Colman. A Structural Viral Mimic of Prosurvival Bcl-2: A Pivotal Role For Sequestering Proapoptotic Bax and Bak. Mol. Cell V. 25 933 2007.
ISSN: ISSN 1097-2765
PubMed: 17386268
DOI: 10.1016/J.MOLCEL.2007.02.004