Sodium in PDB 2j5a: Folding of S6 Structures with Divergent Amino-Acid Composition: Pathway Flexibility Within Partly Overlapping Foldons

The structure of Folding of S6 Structures with Divergent Amino-Acid Composition: Pathway Flexibility Within Partly Overlapping Foldons, PDB code: 2j5a was solved by S.Hansson, L.Olofsson, L.Hedberg, M.Oliveberg, D.T.Logan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.55 / 2.30
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	75.570, 75.570, 55.500, 90.00, 90.00, 120.00
R / Rfree (%)	22.3 / 27.4

The binding sites of Sodium atom in the Folding of S6 Structures with Divergent Amino-Acid Composition: Pathway Flexibility Within Partly Overlapping Foldons (pdb code 2j5a). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Folding of S6 Structures with Divergent Amino-Acid Composition: Pathway Flexibility Within Partly Overlapping Foldons, PDB code: 2j5a:

Sodium binding site 1 out of 1 in the Folding of S6 Structures with Divergent Amino-Acid Composition: Pathway Flexibility Within Partly Overlapping Foldons


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Folding of S6 Structures with Divergent Amino-Acid Composition: Pathway Flexibility Within Partly Overlapping Foldons within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1109 b:34.2 occ:1.00 O A:HOH2033 2.1 37.8 1.0 O A:ASP89 2.2 39.0 1.0 O A:VAL92 2.3 37.6 1.0 O A:LEU86 2.4 33.1 1.0 O A:LYS87 2.5 35.1 1.0 C A:LYS87 3.3 35.1 1.0 C A:ASP89 3.3 38.8 1.0 C A:VAL92 3.4 36.6 1.0 C A:LEU86 3.5 33.6 1.0 CZ3 A:TRP95 3.7 38.8 1.0 CA A:LYS87 3.7 34.5 1.0 N A:ASP89 3.9 37.6 1.0 O A:HOH2032 3.9 49.5 1.0 CB A:VAL92 3.9 37.3 1.0 CA A:VAL92 4.0 37.0 1.0 N A:LYS87 4.0 33.8 1.0 CA A:ASP89 4.0 37.9 1.0 N A:VAL92 4.1 38.4 1.0 CE3 A:TRP95 4.1 38.4 1.0 N A:ILE88 4.2 35.3 1.0 C A:ILE88 4.2 37.1 1.0 CH2 A:TRP95 4.3 38.0 1.0 N A:GLU90 4.3 39.6 1.0 CG1 A:VAL92 4.4 35.4 1.0 O A:HOH2024 4.4 54.0 1.0 CB A:ASP89 4.4 38.1 1.0 CA A:GLU90 4.5 40.6 1.0 N A:ILE93 4.5 36.0 1.0 CA A:ILE88 4.7 36.1 1.0 C A:GLU90 4.7 39.9 1.0 CA A:LEU86 4.7 33.2 1.0 O A:ILE88 4.8 37.5 1.0 CA A:ILE93 4.8 35.6 1.0 O A:GLU90 5.0 38.9 1.0

M.Olofsson, S.Hansson, L.Hedberg, D.T.Logan, M.Oliveberg. Folding of S6 Structures with Divergent Amino Acid Composition: Pathway Flexibility Within Partly Overlapping Foldons. J.Mol.Biol. V. 365 237 2007.
ISSN: ISSN 0022-2836
PubMed: 17056063
DOI: 10.1016/J.JMB.2006.09.016