Sodium in PDB 2im3: Crystal Structure of Poliovirus Polymerase Complexed with Utp and MN2+

Enzymatic activity of Crystal Structure of Poliovirus Polymerase Complexed with Utp and MN2+

All present enzymatic activity of Crystal Structure of Poliovirus Polymerase Complexed with Utp and MN2+:
2.7.7.48;

Protein crystallography data

The structure of Crystal Structure of Poliovirus Polymerase Complexed with Utp and MN2+, PDB code: 2im3 was solved by A.A.Thompson, O.B.Peersen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	29.70 / 2.60
*Space group*	P 6₅
*Cell size a, b, c (Å), α, β, γ (°)*	128.115, 128.115, 112.833, 90.00, 90.00, 120.00
*R / R_free (%)*	23.7 / 26.9

Other elements in 2im3:

The structure of Crystal Structure of Poliovirus Polymerase Complexed with Utp and MN2+ also contains other interesting chemical elements:

Arsenic	(As)	4 atoms
Manganese	(Mn)	2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Poliovirus Polymerase Complexed with Utp and MN2+ (pdb code 2im3). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Poliovirus Polymerase Complexed with Utp and MN2+, PDB code: 2im3:

Sodium binding site 1 out of 1 in 2im3

Go back to

Sodium Binding Sites List in 2im3

Sodium binding site 1 out of 1 in the Crystal Structure of Poliovirus Polymerase Complexed with Utp and MN2+

Mono view

Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Poliovirus Polymerase Complexed with Utp and MN2+ within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Na3001 b:47.5 occ:1.00	OG	A:SER271	2.7	44.5	1.0
	O	A:GLY284	2.7	44.5	1.0
	O	A:GLY285	2.8	44.1	1.0
	CB	A:SER271	3.1	44.8	1.0
	O	A:LEU268	3.1	37.2	1.0
	O	A:ASN269	3.2	40.7	1.0
	CG1	A:VAL282	3.6	43.4	1.0
	C	A:GLY285	3.7	42.9	1.0
	C	A:GLY284	3.7	44.2	1.0
	CB	A:VAL282	3.8	44.4	1.0
	NE2	A:HIS273	3.9	52.9	1.0
	N	A:SER271	4.0	42.9	1.0
	C	A:ASN269	4.1	40.2	1.0
	CG	A:PRO287	4.1	46.2	1.0
	O	A:VAL282	4.1	43.1	1.0
	CA	A:GLY285	4.1	43.5	1.0
	CA	A:SER271	4.1	44.2	1.0
	C	A:LEU268	4.2	39.3	1.0
	N	A:GLY285	4.3	44.5	1.0
	CD	A:PRO287	4.3	46.2	1.0
	C	A:VAL282	4.6	44.0	1.0
	N	A:GLY284	4.6	44.4	1.0
	CA	A:ASN269	4.6	40.9	1.0
	N	A:MET286	4.7	42.3	1.0
	CA	A:GLY284	4.7	44.6	1.0
	CE1	A:HIS273	4.7	54.0	1.0
	N	A:PRO287	4.8	45.9	1.0
	CG2	A:VAL282	4.8	44.6	1.0
	CA	A:VAL282	4.8	44.7	1.0
	N	A:ASN269	4.9	39.7	1.0
	C	A:HIS270	4.9	42.2	1.0
	CD2	A:HIS273	5.0	54.5	1.0

Reference:

A.A.Thompson, R.A.Albertini, O.B.Peersen. Stabilization of Poliovirus Polymerase By Ntp Binding and Fingers-Thumb Interactions. J.Mol.Biol. V. 366 1459 2007.
ISSN: ISSN 0022-2836
PubMed: 17223130
DOI: 10.1016/J.JMB.2006.11.070

Page generated: Mon Oct 7 02:53:51 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW

	© Copyright 2008-2020 by atomistry.com
Home \| Site Map \| Copyright \| Contact us \| Privacy