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Sodium in PDB 2ily: Crystal Structure of Poliovirus Polymerase Complexed with Atp and MG2+

Enzymatic activity of Crystal Structure of Poliovirus Polymerase Complexed with Atp and MG2+

All present enzymatic activity of Crystal Structure of Poliovirus Polymerase Complexed with Atp and MG2+:
2.7.7.48;

Protein crystallography data

The structure of Crystal Structure of Poliovirus Polymerase Complexed with Atp and MG2+, PDB code: 2ily was solved by A.A.Thompson, O.B.Peersen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.80 / 2.60
Space group P 65
Cell size a, b, c (Å), α, β, γ (°) 128.526, 128.526, 112.891, 90.00, 90.00, 120.00
R / Rfree (%) 23 / 25

Other elements in 2ily:

The structure of Crystal Structure of Poliovirus Polymerase Complexed with Atp and MG2+ also contains other interesting chemical elements:

Arsenic (As) 4 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Poliovirus Polymerase Complexed with Atp and MG2+ (pdb code 2ily). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Poliovirus Polymerase Complexed with Atp and MG2+, PDB code: 2ily:

Sodium binding site 1 out of 1 in 2ily

Go back to Sodium Binding Sites List in 2ily
Sodium binding site 1 out of 1 in the Crystal Structure of Poliovirus Polymerase Complexed with Atp and MG2+


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Poliovirus Polymerase Complexed with Atp and MG2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na3001

b:38.8
occ:1.00
 O A:GLY285 2.7 37.1 1.0
OG A:SER271 2.7 46.5 1.0
O A:LEU268 2.7 37.3 1.0
O A:GLY284 2.8 33.7 1.0
O A:ASN269 3.2 42.2 1.0
CB A:SER271 3.7 46.1 1.0
C A:GLY285 3.7 35.1 1.0
O A:HOH524 3.7 34.3 1.0
CG A:PRO287 3.7 34.1 1.0
C A:GLY284 3.8 34.4 1.0
C A:LEU268 3.9 39.4 1.0
CG1 A:VAL282 4.0 36.9 1.0
CD A:PRO287 4.0 34.1 1.0
C A:ASN269 4.1 42.1 1.0
NE2 A:HIS273 4.2 49.1 1.0
CB A:VAL282 4.2 38.3 1.0
N A:SER271 4.2 45.6 1.0
CA A:GLY285 4.2 35.6 1.0
O A:VAL282 4.3 37.2 1.0
N A:GLY285 4.5 35.5 1.0
N A:PRO287 4.5 33.8 1.0
CA A:SER271 4.6 45.8 1.0
CA A:ASN269 4.7 40.5 1.0
N A:MET286 4.7 32.9 1.0
CE1 A:HIS273 4.7 49.6 1.0
N A:ASN269 4.8 39.2 1.0
C A:VAL282 4.8 37.6 1.0
N A:GLY284 4.8 33.9 1.0
C A:HIS270 4.9 45.8 1.0
CA A:GLY284 4.9 34.4 1.0
N A:HIS270 4.9 43.4 1.0
CA A:LEU268 4.9 40.3 1.0
O A:TYR267 4.9 44.9 1.0
CB A:PRO287 4.9 35.4 1.0
C A:MET286 5.0 32.0 1.0

Reference:

A.A.Thompson, R.A.Albertini, O.B.Peersen. Stabilization of Poliovirus Polymerase By Ntp Binding and Fingers-Thumb Interactions. J.Mol.Biol. V. 366 1459 2007.
ISSN: ISSN 0022-2836
PubMed: 17223130
DOI: 10.1016/J.JMB.2006.11.070
Page generated: Mon Oct 7 02:53:34 2024

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