Sodium in PDB 2hyd: Multidrug Abc Transporter SAV1866

The structure of Multidrug Abc Transporter SAV1866, PDB code: 2hyd was solved by R.J.P.Dawson, K.P.Locher, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	N/A / 3.00
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	161.279, 103.955, 181.013, 90.00, 97.99, 90.00
R / Rfree (%)	25.5 / 27.2

The binding sites of Sodium atom in the Multidrug Abc Transporter SAV1866 (pdb code 2hyd). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Multidrug Abc Transporter SAV1866, PDB code: 2hyd:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Multidrug Abc Transporter SAV1866


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Multidrug Abc Transporter SAV1866 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na900 b:24.1 occ:1.00 O A:GLY367 2.3 84.9 1.0 O A:SER524 2.4 0.2 1.0 OG1 A:THR369 2.4 91.2 1.0 O A:ARG527 2.9 96.2 1.0 C A:GLY367 3.5 84.9 1.0 C A:SER524 3.6 0.2 1.0 O A:LYS525 3.6 0.5 1.0 CB A:THR369 3.7 91.2 1.0 C A:GLU368 3.9 90.3 1.0 N A:THR369 3.9 80.9 1.0 O A:GLU368 4.0 90.3 1.0 C A:ARG527 4.1 96.2 1.0 C A:LYS525 4.1 0.5 1.0 CA A:THR369 4.2 80.9 1.0 N A:ARG527 4.3 96.2 1.0 OG1 A:THR529 4.3 98.7 1.0 CB A:SER524 4.3 0.8 1.0 CA A:GLY367 4.4 84.9 1.0 CA A:SER524 4.4 0.2 1.0 N A:GLU368 4.4 90.3 1.0 CA A:GLU368 4.5 90.3 0.5 N A:LYS525 4.5 0.5 1.0 OD2 A:ASP543 4.6 99.3 1.0 CB A:THR529 4.6 98.7 1.0 CA A:LYS525 4.6 0.5 1.0 CG2 A:THR369 4.8 91.2 1.0 CA A:ARG527 4.8 96.2 1.0 N A:ASP526 4.8 0.9 1.0 N A:THR529 4.9 87.4 1.0

Sodium binding site 2 out of 2 in the Multidrug Abc Transporter SAV1866


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Multidrug Abc Transporter SAV1866 within 5.0Å range: probe atom residue distance (Å) B Occ B:Na910 b:31.3 occ:1.00 O B:ARG527 2.4 0.6 1.0 O B:SER524 2.4 0.5 1.0 OG1 B:THR369 2.4 75.0 1.0 O B:GLY367 2.7 73.6 1.0 OG1 B:THR529 3.4 79.1 1.0 C B:SER524 3.5 0.5 1.0 C B:ARG527 3.6 0.6 1.0 C B:GLY367 3.7 73.6 1.0 CB B:THR369 3.7 75.0 1.0 O B:GLU368 3.8 78.4 1.0 CB B:THR529 3.8 79.1 1.0 C B:GLU368 3.9 78.4 1.0 CB B:SER524 4.0 0.7 1.0 N B:ARG527 4.0 0.6 1.0 N B:THR369 4.0 72.7 1.0 CA B:THR369 4.1 72.7 1.0 CA B:SER524 4.1 0.5 1.0 O B:LYS525 4.1 0.0 1.0 N B:THR529 4.2 0.3 1.0 CA B:ARG527 4.3 0.6 1.0 C B:LYS525 4.5 0.0 1.0 CA B:GLY367 4.5 73.6 1.0 N B:THR528 4.6 97.0 1.0 N B:LYS525 4.6 0.0 1.0 N B:GLU368 4.6 78.4 1.0 CG2 B:THR369 4.6 75.0 1.0 CA B:THR529 4.7 0.3 1.0 C B:THR528 4.7 97.0 1.0 CA B:GLU368 4.7 78.4 0.5 CA B:THR528 4.8 97.0 1.0 CA B:LYS525 4.9 0.0 1.0 CB B:ARG527 5.0 0.2 1.0 N B:ASP526 5.0 1.0 1.0 OG B:SER524 5.0 0.7 1.0

R.J.Dawson, K.P.Locher. Structure of A Bacterial Multidrug Abc Transporter. Nature V. 443 180 2006.
ISSN: ISSN 0028-0836
PubMed: 16943773
DOI: 10.1038/NATURE05155