Atomistry » Sodium » PDB 2htx-2isp » 2hyd
Atomistry »
  Sodium »
    PDB 2htx-2isp »
      2hyd »

Sodium in PDB 2hyd: Multidrug Abc Transporter SAV1866

Protein crystallography data

The structure of Multidrug Abc Transporter SAV1866, PDB code: 2hyd was solved by R.J.P.Dawson, K.P.Locher, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) N/A / 3.00
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 161.279, 103.955, 181.013, 90.00, 97.99, 90.00
R / Rfree (%) 25.5 / 27.2

Sodium Binding Sites:

The binding sites of Sodium atom in the Multidrug Abc Transporter SAV1866 (pdb code 2hyd). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Multidrug Abc Transporter SAV1866, PDB code: 2hyd:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 2hyd

Go back to Sodium Binding Sites List in 2hyd
Sodium binding site 1 out of 2 in the Multidrug Abc Transporter SAV1866


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Multidrug Abc Transporter SAV1866 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na900

b:24.1
occ:1.00
O A:GLY367 2.3 84.9 1.0
O A:SER524 2.4 0.2 1.0
OG1 A:THR369 2.4 91.2 1.0
O A:ARG527 2.9 96.2 1.0
C A:GLY367 3.5 84.9 1.0
C A:SER524 3.6 0.2 1.0
O A:LYS525 3.6 0.5 1.0
CB A:THR369 3.7 91.2 1.0
C A:GLU368 3.9 90.3 1.0
N A:THR369 3.9 80.9 1.0
O A:GLU368 4.0 90.3 1.0
C A:ARG527 4.1 96.2 1.0
C A:LYS525 4.1 0.5 1.0
CA A:THR369 4.2 80.9 1.0
N A:ARG527 4.3 96.2 1.0
OG1 A:THR529 4.3 98.7 1.0
CB A:SER524 4.3 0.8 1.0
CA A:GLY367 4.4 84.9 1.0
CA A:SER524 4.4 0.2 1.0
N A:GLU368 4.4 90.3 1.0
CA A:GLU368 4.5 90.3 0.5
N A:LYS525 4.5 0.5 1.0
OD2 A:ASP543 4.6 99.3 1.0
CB A:THR529 4.6 98.7 1.0
CA A:LYS525 4.6 0.5 1.0
CG2 A:THR369 4.8 91.2 1.0
CA A:ARG527 4.8 96.2 1.0
N A:ASP526 4.8 0.9 1.0
N A:THR529 4.9 87.4 1.0

Sodium binding site 2 out of 2 in 2hyd

Go back to Sodium Binding Sites List in 2hyd
Sodium binding site 2 out of 2 in the Multidrug Abc Transporter SAV1866


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Multidrug Abc Transporter SAV1866 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na910

b:31.3
occ:1.00
O B:ARG527 2.4 0.6 1.0
O B:SER524 2.4 0.5 1.0
OG1 B:THR369 2.4 75.0 1.0
O B:GLY367 2.7 73.6 1.0
OG1 B:THR529 3.4 79.1 1.0
C B:SER524 3.5 0.5 1.0
C B:ARG527 3.6 0.6 1.0
C B:GLY367 3.7 73.6 1.0
CB B:THR369 3.7 75.0 1.0
O B:GLU368 3.8 78.4 1.0
CB B:THR529 3.8 79.1 1.0
C B:GLU368 3.9 78.4 1.0
CB B:SER524 4.0 0.7 1.0
N B:ARG527 4.0 0.6 1.0
N B:THR369 4.0 72.7 1.0
CA B:THR369 4.1 72.7 1.0
CA B:SER524 4.1 0.5 1.0
O B:LYS525 4.1 0.0 1.0
N B:THR529 4.2 0.3 1.0
CA B:ARG527 4.3 0.6 1.0
C B:LYS525 4.5 0.0 1.0
CA B:GLY367 4.5 73.6 1.0
N B:THR528 4.6 97.0 1.0
N B:LYS525 4.6 0.0 1.0
N B:GLU368 4.6 78.4 1.0
CG2 B:THR369 4.6 75.0 1.0
CA B:THR529 4.7 0.3 1.0
C B:THR528 4.7 97.0 1.0
CA B:GLU368 4.7 78.4 0.5
CA B:THR528 4.8 97.0 1.0
CA B:LYS525 4.9 0.0 1.0
CB B:ARG527 5.0 0.2 1.0
N B:ASP526 5.0 1.0 1.0
OG B:SER524 5.0 0.7 1.0

Reference:

R.J.Dawson, K.P.Locher. Structure of A Bacterial Multidrug Abc Transporter. Nature V. 443 180 2006.
ISSN: ISSN 0028-0836
PubMed: 16943773
DOI: 10.1038/NATURE05155
Page generated: Tue Dec 15 05:50:51 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy